Hb_000015_080

Information

Type -
Description -
Location Contig15: 65662-72191
Sequence    

Annotation

kegg
ID mdm:103448243
description uncharacterized LOC103448243
nr
ID XP_012089528.1
description PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0D2UER4
description Gossypium raimondii chromosome 9, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_009G018600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12498: 67228-67644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000015_080 0.0 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
2 Hb_002928_130 0.0555715351 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
3 Hb_011360_140 0.0697924972 - - 40S ribosomal protein S19, putative [Ricinus communis]
4 Hb_003540_040 0.0743018826 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
5 Hb_000392_440 0.0747787511 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
6 Hb_005993_040 0.0780680203 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
7 Hb_000392_270 0.0788724053 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
8 Hb_001828_090 0.0805262948 - - prohibitin, putative [Ricinus communis]
9 Hb_011571_020 0.0807513035 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
10 Hb_000684_090 0.0812963071 transcription factor TF Family: S1Fa-like -
11 Hb_000473_040 0.0815322045 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
12 Hb_002603_100 0.0826044009 - - ATATH9, putative [Ricinus communis]
13 Hb_000661_250 0.0847466066 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
14 Hb_002685_140 0.0852697486 - - PREDICTED: membrin-11 [Jatropha curcas]
15 Hb_002007_060 0.0866452818 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
16 Hb_021443_070 0.0869404345 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
17 Hb_003018_200 0.087231182 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
18 Hb_007426_230 0.0874682683 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
19 Hb_000221_220 0.0882684845 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
20 Hb_001259_090 0.0896789686 - - hypothetical protein B456_005G056700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000015_080 Hb_000015_080 Hb_002928_130 Hb_002928_130 Hb_000015_080--Hb_002928_130 Hb_011360_140 Hb_011360_140 Hb_000015_080--Hb_011360_140 Hb_003540_040 Hb_003540_040 Hb_000015_080--Hb_003540_040 Hb_000392_440 Hb_000392_440 Hb_000015_080--Hb_000392_440 Hb_005993_040 Hb_005993_040 Hb_000015_080--Hb_005993_040 Hb_000392_270 Hb_000392_270 Hb_000015_080--Hb_000392_270 Hb_002928_130--Hb_005993_040 Hb_002232_440 Hb_002232_440 Hb_002928_130--Hb_002232_440 Hb_002928_130--Hb_000392_440 Hb_002346_020 Hb_002346_020 Hb_002928_130--Hb_002346_020 Hb_000331_080 Hb_000331_080 Hb_002928_130--Hb_000331_080 Hb_000473_040 Hb_000473_040 Hb_011360_140--Hb_000473_040 Hb_011571_020 Hb_011571_020 Hb_011360_140--Hb_011571_020 Hb_000933_180 Hb_000933_180 Hb_011360_140--Hb_000933_180 Hb_011360_140--Hb_000392_440 Hb_001828_090 Hb_001828_090 Hb_011360_140--Hb_001828_090 Hb_011360_140--Hb_005993_040 Hb_001776_110 Hb_001776_110 Hb_003540_040--Hb_001776_110 Hb_125000_010 Hb_125000_010 Hb_003540_040--Hb_125000_010 Hb_022250_040 Hb_022250_040 Hb_003540_040--Hb_022250_040 Hb_003540_040--Hb_000392_270 Hb_009711_030 Hb_009711_030 Hb_003540_040--Hb_009711_030 Hb_002097_110 Hb_002097_110 Hb_003540_040--Hb_002097_110 Hb_000392_440--Hb_005993_040 Hb_010661_030 Hb_010661_030 Hb_000392_440--Hb_010661_030 Hb_000392_440--Hb_011571_020 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_005993_040--Hb_011571_020 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_000977_080 Hb_000977_080 Hb_000392_270--Hb_000977_080 Hb_001369_650 Hb_001369_650 Hb_000392_270--Hb_001369_650 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_003878_190 Hb_003878_190 Hb_000392_270--Hb_003878_190 Hb_000392_270--Hb_011360_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5703 4.92391 4.95728 2.37298 13.2349 10.3165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5594 14.9438 10.5684 3.73435 3.69548

CAGE analysis