Hb_001235_190

Information

Type -
Description -
Location Contig1235: 228632-232541
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07470g
description POPTRDRAFT_817164; hypothetical protein
nr
ID XP_012069981.1
description PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
swissprot
ID Q9SRQ3
description Peroxisome biogenesis protein 19-1 OS=Arabidopsis thaliana GN=PEX19-1 PE=1 SV=1
trembl
ID A0A067KUI6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03402 PE=4 SV=1
Gene Ontology
ID GO:0005777
description peroxisome biogenesis protein 19-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07175: 228582-232436
cDNA
(Sanger)
(ID:Location)		 049_H15.ab1: 229891-232325

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_190 0.0 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
2 Hb_008173_090 0.04635021 - - glutathione peroxidase, putative [Ricinus communis]
3 Hb_001722_100 0.0617839771 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002963_010 0.0678006464 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
5 Hb_004204_120 0.0679191207 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
6 Hb_000307_090 0.0687737605 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
7 Hb_002110_120 0.0697992343 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
8 Hb_003656_070 0.0700926085 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
9 Hb_002301_140 0.0708579183 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
10 Hb_000200_100 0.0709226119 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
11 Hb_028995_040 0.0713676769 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
12 Hb_007317_150 0.0729144336 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
13 Hb_000970_010 0.0734558027 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
14 Hb_000698_030 0.0774360684 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
15 Hb_000574_480 0.0779644647 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
16 Hb_003126_080 0.0783769936 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
17 Hb_023226_040 0.0785501595 - - PREDICTED: kxDL motif-containing protein 1 [Jatropha curcas]
18 Hb_000007_100 0.0787255116 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
19 Hb_159809_020 0.0791236383 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_002518_050 0.0793589664 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]

Gene co-expression network

sample Hb_001235_190 Hb_001235_190 Hb_008173_090 Hb_008173_090 Hb_001235_190--Hb_008173_090 Hb_001722_100 Hb_001722_100 Hb_001235_190--Hb_001722_100 Hb_002963_010 Hb_002963_010 Hb_001235_190--Hb_002963_010 Hb_004204_120 Hb_004204_120 Hb_001235_190--Hb_004204_120 Hb_000307_090 Hb_000307_090 Hb_001235_190--Hb_000307_090 Hb_002110_120 Hb_002110_120 Hb_001235_190--Hb_002110_120 Hb_003656_070 Hb_003656_070 Hb_008173_090--Hb_003656_070 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_000574_480 Hb_000574_480 Hb_008173_090--Hb_000574_480 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060 Hb_014720_080 Hb_014720_080 Hb_001722_100--Hb_014720_080 Hb_001722_100--Hb_002963_010 Hb_007479_020 Hb_007479_020 Hb_001722_100--Hb_007479_020 Hb_000834_270 Hb_000834_270 Hb_001722_100--Hb_000834_270 Hb_001722_100--Hb_008173_090 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_000170_010 Hb_000170_010 Hb_002963_010--Hb_000170_010 Hb_002963_010--Hb_000834_270 Hb_004837_140 Hb_004837_140 Hb_002963_010--Hb_004837_140 Hb_002963_010--Hb_000574_480 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750 Hb_000798_030 Hb_000798_030 Hb_004204_120--Hb_000798_030 Hb_005736_060 Hb_005736_060 Hb_000307_090--Hb_005736_060 Hb_000307_090--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_000307_090--Hb_000926_300 Hb_000307_090--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_000307_090--Hb_003599_040 Hb_007317_150 Hb_007317_150 Hb_002110_120--Hb_007317_150 Hb_001269_630 Hb_001269_630 Hb_002110_120--Hb_001269_630 Hb_000020_060 Hb_000020_060 Hb_002110_120--Hb_000020_060 Hb_002110_120--Hb_003656_070 Hb_002110_120--Hb_008173_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.672 14.9199 13.1354 11.5942 21.266 23.181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6226 53.1141 25.3179 14.0146 7.73411

CAGE analysis