Hb_003607_150

Information

Type -
Description -
Location Contig3607: 136887-139279
Sequence    

Annotation

kegg
ID tcc:TCM_031877
description MRNA splicing factor, thioredoxin-like U5 snRNP
nr
ID XP_012085151.1
description PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
swissprot
ID Q9NX01
description Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1
trembl
ID A0A067K2B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17568 PE=4 SV=1
Gene Ontology
ID GO:0005681
description thioredoxin-like protein 4b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_150 0.0 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
2 Hb_005186_050 0.0575261855 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
3 Hb_003069_010 0.0717329086 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
4 Hb_000251_070 0.0741231691 - - hypothetical protein L484_010641 [Morus notabilis]
5 Hb_002685_040 0.0755694458 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
6 Hb_007154_020 0.0764069734 - - -
7 Hb_028841_030 0.0776115939 - - -
8 Hb_001662_070 0.0788014569 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
9 Hb_004934_030 0.082075516 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
10 Hb_003363_110 0.0835618243 - - protein with unknown function [Ricinus communis]
11 Hb_011381_060 0.0873304642 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
12 Hb_001277_070 0.0888660281 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
13 Hb_145880_030 0.0904034769 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
14 Hb_000025_230 0.0917396397 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
15 Hb_165132_010 0.0937568927 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
16 Hb_000270_270 0.0940005235 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
17 Hb_001328_040 0.094152558 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
18 Hb_112798_030 0.0944141989 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004931_090 0.0945664394 - - PREDICTED: chromatin modification-related protein MEAF6-like isoform X2 [Jatropha curcas]
20 Hb_001934_030 0.0949554313 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003607_150 Hb_003607_150 Hb_005186_050 Hb_005186_050 Hb_003607_150--Hb_005186_050 Hb_003069_010 Hb_003069_010 Hb_003607_150--Hb_003069_010 Hb_000251_070 Hb_000251_070 Hb_003607_150--Hb_000251_070 Hb_002685_040 Hb_002685_040 Hb_003607_150--Hb_002685_040 Hb_007154_020 Hb_007154_020 Hb_003607_150--Hb_007154_020 Hb_028841_030 Hb_028841_030 Hb_003607_150--Hb_028841_030 Hb_005186_050--Hb_003069_010 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_005186_050--Hb_000251_070 Hb_010661_030 Hb_010661_030 Hb_003069_010--Hb_010661_030 Hb_012627_050 Hb_012627_050 Hb_003069_010--Hb_012627_050 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070 Hb_004934_110 Hb_004934_110 Hb_000251_070--Hb_004934_110 Hb_001662_070 Hb_001662_070 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_000251_070--Hb_007154_020 Hb_002685_040--Hb_005186_050 Hb_001832_060 Hb_001832_060 Hb_002685_040--Hb_001832_060 Hb_002685_040--Hb_001662_070 Hb_004195_270 Hb_004195_270 Hb_002685_040--Hb_004195_270 Hb_000622_180 Hb_000622_180 Hb_002685_040--Hb_000622_180 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_007154_020--Hb_010661_030 Hb_007154_020--Hb_001512_060 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_028841_030--Hb_005186_050 Hb_028841_030--Hb_011381_060 Hb_028841_030--Hb_007154_020 Hb_028841_030--Hb_003069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.3567 4.30331 14.6317 5.96394 12.6268 9.91348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8485 23.5761 14.0577 4.98337 4.59988

CAGE analysis