Hb_005186_050

Information

Type -
Description -
Location Contig5186: 49474-52618
Sequence    

Annotation

kegg
ID cit:102608412
description endoplasmin homolog
nr
ID XP_012065671.1
description PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
swissprot
ID P35016
description Endoplasmin homolog OS=Catharanthus roseus GN=HSP90 PE=2 SV=1
trembl
ID W9QDJ9
description Uncharacterized protein OS=Morus notabilis GN=L484_014056 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46608: 49263-52857 , PASA_asmbl_46609: 49290-52878 , PASA_asmbl_46610: 49263-52817 , PASA_asmbl_46611: 49637-52857 , PASA_asmbl_46612: 51693-52178 , PASA_asmbl_46613: 50382-50661
cDNA
(Sanger)
(ID:Location)		 051_K22.ab1: 49648-52876

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005186_050 0.0 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
2 Hb_003069_010 0.0421182786 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
3 Hb_003607_150 0.0575261855 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
4 Hb_007154_020 0.068838714 - - -
5 Hb_000362_200 0.0698303554 - - exonuclease family protein [Populus trichocarpa]
6 Hb_001512_060 0.0721284096 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
7 Hb_000251_070 0.072902865 - - hypothetical protein L484_010641 [Morus notabilis]
8 Hb_028841_030 0.0738006704 - - -
9 Hb_003363_110 0.0742410858 - - protein with unknown function [Ricinus communis]
10 Hb_002685_040 0.0750533578 - - hypothetical protein CICLE_v10017252mg [Citrus clementina]
11 Hb_010661_030 0.0751150341 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
12 Hb_001662_070 0.0782492094 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
13 Hb_004934_030 0.0830239889 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
14 Hb_002026_220 0.0871334969 - - Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]
15 Hb_004531_070 0.0872709639 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
16 Hb_009421_020 0.0884275121 - - PREDICTED: caltractin-like [Jatropha curcas]
17 Hb_007477_070 0.0889756304 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
18 Hb_007576_040 0.0893070235 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
19 Hb_004093_090 0.0911492522 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
20 Hb_000141_040 0.0917040108 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]

Gene co-expression network

sample Hb_005186_050 Hb_005186_050 Hb_003069_010 Hb_003069_010 Hb_005186_050--Hb_003069_010 Hb_003607_150 Hb_003607_150 Hb_005186_050--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_010661_030 Hb_010661_030 Hb_003069_010--Hb_010661_030 Hb_003069_010--Hb_003607_150 Hb_012627_050 Hb_012627_050 Hb_003069_010--Hb_012627_050 Hb_003069_010--Hb_007154_020 Hb_004531_070 Hb_004531_070 Hb_003069_010--Hb_004531_070 Hb_003607_150--Hb_000251_070 Hb_002685_040 Hb_002685_040 Hb_003607_150--Hb_002685_040 Hb_003607_150--Hb_007154_020 Hb_028841_030 Hb_028841_030 Hb_003607_150--Hb_028841_030 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_007154_020--Hb_010661_030 Hb_007154_020--Hb_001512_060 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_000362_200--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_000362_200--Hb_001534_120 Hb_009421_020 Hb_009421_020 Hb_000362_200--Hb_009421_020 Hb_004093_090 Hb_004093_090 Hb_000362_200--Hb_004093_090 Hb_007477_070 Hb_007477_070 Hb_000362_200--Hb_007477_070 Hb_001512_060--Hb_010921_010 Hb_001512_060--Hb_001534_120 Hb_001512_060--Hb_007477_070 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_004934_110 Hb_004934_110 Hb_000251_070--Hb_004934_110 Hb_001662_070 Hb_001662_070 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_000251_070--Hb_007154_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.2187 9.45192 25.2097 11.6836 23.6197 20.3708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0368 38.8418 20.5926 9.7559 10.6277

CAGE analysis