Hb_000062_650

Information

Type -
Description -
Location Contig62: 465712-472862
Sequence    

Annotation

kegg
ID cic:CICLE_v100031692m
description hypothetical protein
nr
ID XP_012065017.1
description PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID V4SL13
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100031692mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51490: 466461-472819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_650 0.0 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
2 Hb_000506_070 0.0592779238 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
3 Hb_008921_020 0.0635245235 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
4 Hb_003641_020 0.0680059576 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
5 Hb_007044_130 0.069108341 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
6 Hb_000735_040 0.0715414181 - - 60S ribosomal protein L32A [Hevea brasiliensis]
7 Hb_002588_010 0.0750919909 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
8 Hb_001141_140 0.0766858119 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
9 Hb_003226_100 0.0819109068 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
10 Hb_012368_020 0.0823376573 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
11 Hb_000042_260 0.0858857939 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
12 Hb_000576_060 0.0861734362 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
13 Hb_000093_110 0.0894909003 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
14 Hb_005063_050 0.0906506249 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
15 Hb_010672_060 0.0910425413 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
16 Hb_012753_230 0.0911235233 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
17 Hb_004052_020 0.0911749136 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
18 Hb_004157_030 0.091215252 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
19 Hb_002660_030 0.0914142404 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009476_020 0.0915675734 - - tryptophan biosynthesis protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000062_650 Hb_000062_650 Hb_000506_070 Hb_000506_070 Hb_000062_650--Hb_000506_070 Hb_008921_020 Hb_008921_020 Hb_000062_650--Hb_008921_020 Hb_003641_020 Hb_003641_020 Hb_000062_650--Hb_003641_020 Hb_007044_130 Hb_007044_130 Hb_000062_650--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010 Hb_000506_070--Hb_000735_040 Hb_003018_020 Hb_003018_020 Hb_000506_070--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_000506_070--Hb_003226_100 Hb_001141_140 Hb_001141_140 Hb_000506_070--Hb_001141_140 Hb_001863_430 Hb_001863_430 Hb_000506_070--Hb_001863_430 Hb_005063_050 Hb_005063_050 Hb_008921_020--Hb_005063_050 Hb_000576_060 Hb_000576_060 Hb_008921_020--Hb_000576_060 Hb_008921_020--Hb_000735_040 Hb_008921_020--Hb_000506_070 Hb_008921_020--Hb_001141_140 Hb_012368_020 Hb_012368_020 Hb_003641_020--Hb_012368_020 Hb_001638_260 Hb_001638_260 Hb_003641_020--Hb_001638_260 Hb_000438_220 Hb_000438_220 Hb_003641_020--Hb_000438_220 Hb_001314_100 Hb_001314_100 Hb_003641_020--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_003641_020--Hb_012573_070 Hb_002783_270 Hb_002783_270 Hb_007044_130--Hb_002783_270 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_174865_010 Hb_174865_010 Hb_000735_040--Hb_174865_010 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_000735_040--Hb_003018_020 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.2192 15.4632 23.7097 25.9373 23.9289 25.9207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.6852 120.056 26.8373 22.3039 11.5946

CAGE analysis