Hb_000261_080

Information

Type -
Description -
Location Contig261: 41558-48090
Sequence    

Annotation

kegg
ID rcu:RCOM_1017980
description hypothetical protein
nr
ID XP_012071100.1
description PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KT01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01098 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27238: 41738-41894 , PASA_asmbl_27239: 42554-47330 , PASA_asmbl_27240: 47368-48029
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_080 0.0 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
2 Hb_002217_050 0.1061503855 - - PREDICTED: uncharacterized protein LOC104607091 isoform X1 [Nelumbo nucifera]
3 Hb_000059_360 0.1162040776 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
4 Hb_004586_320 0.1197739892 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
5 Hb_004375_140 0.1229246078 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
6 Hb_003077_040 0.1247260595 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
7 Hb_000103_010 0.1261800637 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
8 Hb_003207_190 0.1270628389 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Populus euphratica]
9 Hb_000671_090 0.128719238 - - PREDICTED: melanoma-associated antigen 1 [Jatropha curcas]
10 Hb_007479_020 0.131366923 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
11 Hb_139294_020 0.1343794643 - - vat protein [Cucumis melo]
12 Hb_021596_090 0.1353590533 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
13 Hb_000329_330 0.1363074445 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
14 Hb_029866_060 0.1363781784 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
15 Hb_089140_100 0.1369826621 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
16 Hb_007044_120 0.1375069212 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
17 Hb_002995_020 0.1375946729 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
18 Hb_006775_090 0.1378385684 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
19 Hb_002110_120 0.1380344587 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
20 Hb_007741_050 0.1384724258 - - vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000261_080 Hb_000261_080 Hb_002217_050 Hb_002217_050 Hb_000261_080--Hb_002217_050 Hb_000059_360 Hb_000059_360 Hb_000261_080--Hb_000059_360 Hb_004586_320 Hb_004586_320 Hb_000261_080--Hb_004586_320 Hb_004375_140 Hb_004375_140 Hb_000261_080--Hb_004375_140 Hb_003077_040 Hb_003077_040 Hb_000261_080--Hb_003077_040 Hb_000103_010 Hb_000103_010 Hb_000261_080--Hb_000103_010 Hb_000297_230 Hb_000297_230 Hb_002217_050--Hb_000297_230 Hb_003053_010 Hb_003053_010 Hb_002217_050--Hb_003053_010 Hb_001832_060 Hb_001832_060 Hb_002217_050--Hb_001832_060 Hb_001300_040 Hb_001300_040 Hb_002217_050--Hb_001300_040 Hb_006831_130 Hb_006831_130 Hb_002217_050--Hb_006831_130 Hb_048476_110 Hb_048476_110 Hb_000059_360--Hb_048476_110 Hb_007044_120 Hb_007044_120 Hb_000059_360--Hb_007044_120 Hb_002374_100 Hb_002374_100 Hb_000059_360--Hb_002374_100 Hb_003207_190 Hb_003207_190 Hb_000059_360--Hb_003207_190 Hb_001221_210 Hb_001221_210 Hb_000059_360--Hb_001221_210 Hb_003813_030 Hb_003813_030 Hb_000059_360--Hb_003813_030 Hb_012675_060 Hb_012675_060 Hb_004586_320--Hb_012675_060 Hb_003656_070 Hb_003656_070 Hb_004586_320--Hb_003656_070 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_001998_050 Hb_001998_050 Hb_004586_320--Hb_001998_050 Hb_000574_480 Hb_000574_480 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010 Hb_021409_030 Hb_021409_030 Hb_004375_140--Hb_021409_030 Hb_004375_140--Hb_000103_010 Hb_001085_120 Hb_001085_120 Hb_004375_140--Hb_001085_120 Hb_129204_030 Hb_129204_030 Hb_004375_140--Hb_129204_030 Hb_004375_140--Hb_004586_320 Hb_000608_370 Hb_000608_370 Hb_004375_140--Hb_000608_370 Hb_001484_070 Hb_001484_070 Hb_003077_040--Hb_001484_070 Hb_003077_040--Hb_000103_010 Hb_003077_040--Hb_001085_120 Hb_000261_140 Hb_000261_140 Hb_003077_040--Hb_000261_140 Hb_000086_280 Hb_000086_280 Hb_003077_040--Hb_000086_280 Hb_000453_120 Hb_000453_120 Hb_003077_040--Hb_000453_120 Hb_000193_120 Hb_000193_120 Hb_000103_010--Hb_000193_120 Hb_000103_010--Hb_001085_120 Hb_000181_300 Hb_000181_300 Hb_000103_010--Hb_000181_300 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.17211 2.07081 5.42648 2.1037 3.6609 3.5667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.65194 11.3541 9.01857 4.0116 0.353265

CAGE analysis