Hb_004052_020

Information

Type -
Description -
Location Contig4052: 41235-43634
Sequence    

Annotation

kegg
ID tcc:TCM_014278
description Mitochondrial import receptor subunit TOM5
nr
ID XP_007037583.1
description Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
swissprot
ID Q9SD80
description Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana GN=TOM5 PE=1 SV=3
trembl
ID A0A061G4X4
description Mitochondrial import receptor subunit TOM5 OS=Theobroma cacao GN=TCM_014278 PE=4 SV=1
Gene Ontology
ID GO:0009536
description mitochondrial import receptor subunit tom5 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40173: 41207-43684 , PASA_asmbl_40175: 41277-43580 , PASA_asmbl_40176: 42493-42822 , PASA_asmbl_40177: 41847-42225
cDNA
(Sanger)
(ID:Location)		 019_G12.ab1: 41259-43637 , 048_J01.ab1: 41273-43684 , 050_I13.ab1: 41273-43684 , 052_I18.ab1: 41446-43580

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_020 0.0 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
2 Hb_012753_230 0.0655067632 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
3 Hb_000057_070 0.0774726891 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
4 Hb_003058_080 0.0834820718 - - Chaperonin 10 isoform 1 [Theobroma cacao]
5 Hb_012573_070 0.0869125971 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002900_160 0.087156418 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
7 Hb_000948_210 0.0875406967 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
8 Hb_003927_140 0.091003478 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
9 Hb_000062_650 0.0911749136 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
10 Hb_001538_120 0.0962341346 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
11 Hb_003528_060 0.0969540732 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
12 Hb_002742_050 0.0977888279 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
13 Hb_000046_560 0.0983258788 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
14 Hb_001214_140 0.099000456 - - 60S ribosomal protein L27a, putative [Ricinus communis]
15 Hb_000699_040 0.1001523321 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
16 Hb_007044_130 0.1012926639 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
17 Hb_003683_110 0.1014214158 - - JHL10I11.3 [Jatropha curcas]
18 Hb_009486_150 0.102841704 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
19 Hb_000451_060 0.1038509528 - - hypothetical protein CICLE_v10010074mg [Citrus clementina]
20 Hb_000617_090 0.1039765645 - - hypoia-responsive family protein 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_004052_020 Hb_004052_020 Hb_012753_230 Hb_012753_230 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_002259_070 Hb_002259_070 Hb_012753_230--Hb_002259_070 Hb_012753_230--Hb_000948_210 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_001538_120 Hb_001538_120 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040 Hb_000057_070--Hb_001538_120 Hb_000545_150 Hb_000545_150 Hb_000057_070--Hb_000545_150 Hb_000057_070--Hb_012573_070 Hb_000526_150 Hb_000526_150 Hb_000057_070--Hb_000526_150 Hb_000057_070--Hb_012753_230 Hb_002783_270 Hb_002783_270 Hb_003058_080--Hb_002783_270 Hb_007044_130 Hb_007044_130 Hb_003058_080--Hb_007044_130 Hb_003058_080--Hb_012753_230 Hb_000046_560 Hb_000046_560 Hb_003058_080--Hb_000046_560 Hb_047823_010 Hb_047823_010 Hb_003058_080--Hb_047823_010 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_000000_170 Hb_000000_170 Hb_002900_160--Hb_000000_170 Hb_002900_160--Hb_002783_270 Hb_003018_020 Hb_003018_020 Hb_002900_160--Hb_003018_020 Hb_000699_160 Hb_000699_160 Hb_002900_160--Hb_000699_160 Hb_002900_160--Hb_007044_130 Hb_000617_090 Hb_000617_090 Hb_000948_210--Hb_000617_090 Hb_000948_210--Hb_012573_070 Hb_000510_110 Hb_000510_110 Hb_000948_210--Hb_000510_110 Hb_000297_230 Hb_000297_230 Hb_000948_210--Hb_000297_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
149.581 49.6989 156.756 101.775 141.244 178.188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
313.522 590.32 105.045 87.0675 36.3456

CAGE analysis