Hb_012753_230

Information

Type -
Description -
Location Contig12753: 119637-121488
Sequence    

Annotation

kegg
ID tcc:TCM_043464
description 60S ribosomal protein L24-1 isoform 1
nr
ID XP_007010133.1
description 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
swissprot
ID Q9FUL4
description 60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1
trembl
ID A0A061FPV3
description 60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08393: 119662-121543 , PASA_asmbl_08394: 119039-120039
cDNA
(Sanger)
(ID:Location)		 009_A24.ab1: 119747-121544 , 022_H15.ab1: 119823-121543 , 030_O06.ab1: 120115-121524 , 045_L01.ab1: 119751-121540

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012753_230 0.0 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
2 Hb_004052_020 0.0655067632 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
3 Hb_002259_070 0.0722922246 - - taz protein, putative [Ricinus communis]
4 Hb_000948_210 0.079482676 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
5 Hb_019516_100 0.0796945224 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_001538_120 0.0801898912 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
7 Hb_007944_040 0.0842170518 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
8 Hb_182305_020 0.0852310726 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
9 Hb_012573_070 0.0852919488 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003927_140 0.0857175762 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
11 Hb_000057_070 0.0880630881 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
12 Hb_000025_600 0.0885839814 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
13 Hb_003528_060 0.0887075983 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
14 Hb_003683_110 0.0895176916 - - JHL10I11.3 [Jatropha curcas]
15 Hb_000545_150 0.0897499322 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
16 Hb_000062_650 0.0911235233 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
17 Hb_009384_020 0.0913881616 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
18 Hb_010261_060 0.0919915494 - - unnamed protein product [Coffea canephora]
19 Hb_005511_160 0.0938848744 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
20 Hb_002588_010 0.0944156904 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]

Gene co-expression network

sample Hb_012753_230 Hb_012753_230 Hb_004052_020 Hb_004052_020 Hb_012753_230--Hb_004052_020 Hb_002259_070 Hb_002259_070 Hb_012753_230--Hb_002259_070 Hb_000948_210 Hb_000948_210 Hb_012753_230--Hb_000948_210 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_001538_120 Hb_001538_120 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_004052_020--Hb_000948_210 Hb_019253_030 Hb_019253_030 Hb_002259_070--Hb_019253_030 Hb_005511_160 Hb_005511_160 Hb_002259_070--Hb_005511_160 Hb_000574_160 Hb_000574_160 Hb_002259_070--Hb_000574_160 Hb_001780_040 Hb_001780_040 Hb_002259_070--Hb_001780_040 Hb_010261_060 Hb_010261_060 Hb_002259_070--Hb_010261_060 Hb_000617_090 Hb_000617_090 Hb_000948_210--Hb_000617_090 Hb_000948_210--Hb_012573_070 Hb_000510_110 Hb_000510_110 Hb_000948_210--Hb_000510_110 Hb_000297_230 Hb_000297_230 Hb_000948_210--Hb_000297_230 Hb_000042_260 Hb_000042_260 Hb_019516_100--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_019516_100--Hb_002588_010 Hb_001158_230 Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_172221_010 Hb_172221_010 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020 Hb_003528_060 Hb_003528_060 Hb_001538_120--Hb_003528_060 Hb_001538_120--Hb_000057_070 Hb_000545_150 Hb_000545_150 Hb_001538_120--Hb_000545_150 Hb_001538_120--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_001538_120--Hb_001818_020 Hb_013405_090 Hb_013405_090 Hb_001538_120--Hb_013405_090 Hb_000111_340 Hb_000111_340 Hb_007944_040--Hb_000111_340 Hb_001268_140 Hb_001268_140 Hb_007944_040--Hb_001268_140 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_007944_040--Hb_002588_010 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
320.917 82.5158 261.301 154.767 327.456 318.397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
605.307 1283.94 307.551 175.455 104.435

CAGE analysis