Hb_001158_230

Information

Type -
Description -
Location Contig1158: 187243-189526
Sequence    

Annotation

kegg
ID cit:102629829
description mitochondrial import inner membrane translocase subunit TIM8-like
nr
ID XP_012090628.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
swissprot
ID Q9XGY4
description Mitochondrial import inner membrane translocase subunit TIM8 OS=Arabidopsis thaliana GN=TIM8 PE=1 SV=1
trembl
ID D6BQN9
description Mitochondrial import inner membrane translocase subunit Tim8/small zinc finger-like protein OS=Jatropha curcas GN=JCGZ_26400 PE=2 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial import inner membrane translocase subunit tim8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04760: 187221-189513
cDNA
(Sanger)
(ID:Location)		 018_M07.ab1: 187287-189513 , 030_I22.ab1: 187320-189505

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_230 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
2 Hb_002687_170 0.0543556988 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
3 Hb_019516_100 0.0685679148 - - 40S ribosomal protein S14, putative [Ricinus communis]
4 Hb_000933_160 0.0703199945 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
5 Hb_076626_010 0.0755508903 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007944_040 0.0760505336 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
7 Hb_005181_030 0.0798093002 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
8 Hb_000062_390 0.0808731335 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
9 Hb_002909_130 0.0816483604 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_000042_260 0.0863391975 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
11 Hb_009384_020 0.0871548694 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
12 Hb_001634_040 0.0884305384 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
13 Hb_010672_070 0.0895252067 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
14 Hb_002259_070 0.0915245675 - - taz protein, putative [Ricinus communis]
15 Hb_005590_020 0.0920063425 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
16 Hb_002588_010 0.0943228355 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
17 Hb_172221_010 0.0943883125 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
18 Hb_004459_040 0.0967631942 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
19 Hb_010672_060 0.0977114774 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
20 Hb_002835_320 0.0977574628 - - 60S ribosomal protein L27B [Hevea brasiliensis]

Gene co-expression network

sample Hb_001158_230 Hb_001158_230 Hb_002687_170 Hb_002687_170 Hb_001158_230--Hb_002687_170 Hb_019516_100 Hb_019516_100 Hb_001158_230--Hb_019516_100 Hb_000933_160 Hb_000933_160 Hb_001158_230--Hb_000933_160 Hb_076626_010 Hb_076626_010 Hb_001158_230--Hb_076626_010 Hb_007944_040 Hb_007944_040 Hb_001158_230--Hb_007944_040 Hb_005181_030 Hb_005181_030 Hb_001158_230--Hb_005181_030 Hb_004459_040 Hb_004459_040 Hb_002687_170--Hb_004459_040 Hb_002687_170--Hb_005181_030 Hb_005474_060 Hb_005474_060 Hb_002687_170--Hb_005474_060 Hb_009421_040 Hb_009421_040 Hb_002687_170--Hb_009421_040 Hb_003994_040 Hb_003994_040 Hb_002687_170--Hb_003994_040 Hb_000042_260 Hb_000042_260 Hb_019516_100--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_019516_100--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_172221_010 Hb_172221_010 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020 Hb_000933_160--Hb_076626_010 Hb_010672_070 Hb_010672_070 Hb_000933_160--Hb_010672_070 Hb_002259_070 Hb_002259_070 Hb_000933_160--Hb_002259_070 Hb_000933_160--Hb_002687_170 Hb_002999_050 Hb_002999_050 Hb_000933_160--Hb_002999_050 Hb_076626_010--Hb_010672_070 Hb_005590_020 Hb_005590_020 Hb_076626_010--Hb_005590_020 Hb_076626_010--Hb_002999_050 Hb_003893_050 Hb_003893_050 Hb_076626_010--Hb_003893_050 Hb_000111_340 Hb_000111_340 Hb_007944_040--Hb_000111_340 Hb_001268_140 Hb_001268_140 Hb_007944_040--Hb_001268_140 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_007944_040--Hb_002588_010 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010 Hb_001279_360 Hb_001279_360 Hb_005181_030--Hb_001279_360 Hb_005181_030--Hb_004459_040 Hb_094608_010 Hb_094608_010 Hb_005181_030--Hb_094608_010 Hb_004157_030 Hb_004157_030 Hb_005181_030--Hb_004157_030 Hb_001085_120 Hb_001085_120 Hb_005181_030--Hb_001085_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8983 8.62055 30.2954 26.8429 35.5276 46.0857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.999 211.433 64.2328 36.6984 38.2054

CAGE analysis