Hb_000933_160

Information

Type -
Description -
Location Contig933: 250997-255537
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09190g
description POPTRDRAFT_832647; hypothetical protein
nr
ID XP_012067724.1
description PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L239
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15665 PE=4 SV=1
Gene Ontology
ID GO:0007275
description sporulation rmd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62914: 251002-251231 , PASA_asmbl_62915: 252535-252982 , PASA_asmbl_62916: 251269-253703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_160 0.0 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
2 Hb_076626_010 0.0685796004 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001158_230 0.0703199945 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
4 Hb_010672_070 0.0747244231 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
5 Hb_002259_070 0.0813764197 - - taz protein, putative [Ricinus communis]
6 Hb_002687_170 0.0881008701 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
7 Hb_002999_050 0.0889892611 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
8 Hb_005590_020 0.0913454899 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
9 Hb_003203_040 0.0986900342 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
10 Hb_007944_040 0.1011362574 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
11 Hb_143766_050 0.1018294701 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
12 Hb_001300_040 0.102098257 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
13 Hb_002909_130 0.103954485 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_003893_050 0.1040327093 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
15 Hb_005511_160 0.1042252597 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
16 Hb_005181_030 0.1052606096 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_003734_140 0.1053933361 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007497_030 0.1071140039 - - mutt domain protein, putative [Ricinus communis]
19 Hb_003994_040 0.1073117379 - - -
20 Hb_000265_050 0.10877061 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]

Gene co-expression network

sample Hb_000933_160 Hb_000933_160 Hb_076626_010 Hb_076626_010 Hb_000933_160--Hb_076626_010 Hb_001158_230 Hb_001158_230 Hb_000933_160--Hb_001158_230 Hb_010672_070 Hb_010672_070 Hb_000933_160--Hb_010672_070 Hb_002259_070 Hb_002259_070 Hb_000933_160--Hb_002259_070 Hb_002687_170 Hb_002687_170 Hb_000933_160--Hb_002687_170 Hb_002999_050 Hb_002999_050 Hb_000933_160--Hb_002999_050 Hb_076626_010--Hb_010672_070 Hb_005590_020 Hb_005590_020 Hb_076626_010--Hb_005590_020 Hb_076626_010--Hb_002999_050 Hb_076626_010--Hb_001158_230 Hb_003893_050 Hb_003893_050 Hb_076626_010--Hb_003893_050 Hb_001158_230--Hb_002687_170 Hb_019516_100 Hb_019516_100 Hb_001158_230--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_001158_230--Hb_007944_040 Hb_005181_030 Hb_005181_030 Hb_001158_230--Hb_005181_030 Hb_010672_070--Hb_005590_020 Hb_010672_070--Hb_002999_050 Hb_003455_040 Hb_003455_040 Hb_010672_070--Hb_003455_040 Hb_003203_040 Hb_003203_040 Hb_010672_070--Hb_003203_040 Hb_019253_030 Hb_019253_030 Hb_002259_070--Hb_019253_030 Hb_005511_160 Hb_005511_160 Hb_002259_070--Hb_005511_160 Hb_012753_230 Hb_012753_230 Hb_002259_070--Hb_012753_230 Hb_000574_160 Hb_000574_160 Hb_002259_070--Hb_000574_160 Hb_001780_040 Hb_001780_040 Hb_002259_070--Hb_001780_040 Hb_010261_060 Hb_010261_060 Hb_002259_070--Hb_010261_060 Hb_004459_040 Hb_004459_040 Hb_002687_170--Hb_004459_040 Hb_002687_170--Hb_005181_030 Hb_005474_060 Hb_005474_060 Hb_002687_170--Hb_005474_060 Hb_009421_040 Hb_009421_040 Hb_002687_170--Hb_009421_040 Hb_003994_040 Hb_003994_040 Hb_002687_170--Hb_003994_040 Hb_003579_030 Hb_003579_030 Hb_002999_050--Hb_003579_030 Hb_001300_040 Hb_001300_040 Hb_002999_050--Hb_001300_040 Hb_002999_050--Hb_005590_020 Hb_002876_120 Hb_002876_120 Hb_002999_050--Hb_002876_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.92757 1.3957 4.48716 2.86662 7.46945 7.16004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4856 31.3764 11.9861 4.56266 6.38013

CAGE analysis