Hb_005511_160

Information

Type -
Description -
Location Contig5511: 145065-148186
Sequence    

Annotation

kegg
ID tcc:TCM_045564
description OB-fold nucleic acid binding domain-containing protein
nr
ID XP_007011379.1
description OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
swissprot
ID Q58CY2
description Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2 SV=1
trembl
ID A0A061FZI6
description OB-fold nucleic acid binding domain-containing protein OS=Theobroma cacao GN=TCM_045564 PE=4 SV=1
Gene Ontology
ID GO:0003743
description probable rna-binding protein eif1ad

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48285: 145106-149965 , PASA_asmbl_48286: 147589-147687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005511_160 0.0 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
2 Hb_011628_040 0.067653452 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
3 Hb_002259_070 0.0686902034 - - taz protein, putative [Ricinus communis]
4 Hb_001979_040 0.0715758266 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
5 Hb_003656_070 0.0737133304 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
6 Hb_003203_040 0.0740011536 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
7 Hb_007416_030 0.0753295 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
8 Hb_011311_010 0.0760136434 - - 60S ribosomal protein L27C [Hevea brasiliensis]
9 Hb_000029_200 0.0763019019 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
10 Hb_005063_050 0.0774325828 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
11 Hb_012368_020 0.0777172771 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
12 Hb_001047_230 0.0801570124 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_004375_140 0.081728985 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
14 Hb_002925_030 0.0830387797 - - 40S ribosomal protein S16B [Hevea brasiliensis]
15 Hb_000975_320 0.0833552279 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
16 Hb_003893_050 0.0837419857 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
17 Hb_007944_040 0.0844699886 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
18 Hb_012753_160 0.0845759999 - - ara4-interacting protein, putative [Ricinus communis]
19 Hb_001998_050 0.084597163 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
20 Hb_002864_050 0.0847448411 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]

Gene co-expression network

sample Hb_005511_160 Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_005511_160--Hb_011628_040 Hb_002259_070 Hb_002259_070 Hb_005511_160--Hb_002259_070 Hb_001979_040 Hb_001979_040 Hb_005511_160--Hb_001979_040 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_003203_040 Hb_003203_040 Hb_005511_160--Hb_003203_040 Hb_007416_030 Hb_007416_030 Hb_005511_160--Hb_007416_030 Hb_011628_040--Hb_003203_040 Hb_003893_050 Hb_003893_050 Hb_011628_040--Hb_003893_050 Hb_001505_020 Hb_001505_020 Hb_011628_040--Hb_001505_020 Hb_001214_160 Hb_001214_160 Hb_011628_040--Hb_001214_160 Hb_005063_050 Hb_005063_050 Hb_011628_040--Hb_005063_050 Hb_019253_030 Hb_019253_030 Hb_002259_070--Hb_019253_030 Hb_012753_230 Hb_012753_230 Hb_002259_070--Hb_012753_230 Hb_000574_160 Hb_000574_160 Hb_002259_070--Hb_000574_160 Hb_001780_040 Hb_001780_040 Hb_002259_070--Hb_001780_040 Hb_010261_060 Hb_010261_060 Hb_002259_070--Hb_010261_060 Hb_001484_070 Hb_001484_070 Hb_001979_040--Hb_001484_070 Hb_000920_110 Hb_000920_110 Hb_001979_040--Hb_000920_110 Hb_001979_040--Hb_001780_040 Hb_000731_190 Hb_000731_190 Hb_001979_040--Hb_000731_190 Hb_002235_350 Hb_002235_350 Hb_001979_040--Hb_002235_350 Hb_008173_090 Hb_008173_090 Hb_003656_070--Hb_008173_090 Hb_001047_230 Hb_001047_230 Hb_003656_070--Hb_001047_230 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_001141_030 Hb_001141_030 Hb_003203_040--Hb_001141_030 Hb_003203_040--Hb_003893_050 Hb_010672_070 Hb_010672_070 Hb_003203_040--Hb_010672_070 Hb_003203_040--Hb_005063_050 Hb_000608_370 Hb_000608_370 Hb_007416_030--Hb_000608_370 Hb_002686_020 Hb_002686_020 Hb_007416_030--Hb_002686_020 Hb_000788_090 Hb_000788_090 Hb_007416_030--Hb_000788_090 Hb_002864_050 Hb_002864_050 Hb_007416_030--Hb_002864_050 Hb_007416_030--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_007416_030--Hb_003683_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8687 9.10411 14.3581 10.371 18.6316 19.9042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.2106 70.2329 30.7473 13.3181 8.20584

CAGE analysis