Hb_002742_050

Information

Type -
Description -
Location Contig2742: 122125-123480
Sequence    

Annotation

kegg
ID cic:CICLE_v10002863mg
description hypothetical protein
nr
ID XP_006432413.1
description hypothetical protein CICLE_v10002863mg [Citrus clementina]
swissprot
ID Q9LVC9
description 60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=2 SV=1
trembl
ID A0A067E181
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033353mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description 60s acidic ribosomal protein p3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28717: 121414-123376 , PASA_asmbl_28718: 122146-123404
cDNA
(Sanger)
(ID:Location)		 004_O05.ab1: 122360-123374 , 005_N19.ab1: 122367-123374 , 006_P17.ab1: 122349-123376 , 010_H04.ab1: 122344-123376 , 015_B12.ab1: 122620-123374 , 015_E22.ab1: 122571-123374 , 015_N11.ab1: 122643-123366 , 016_E23.ab1: 122590-123374 , 026_H15.ab1: 122641-123368 , 036_H22.ab1: 122360-123374 , 040_H23.ab1: 122345-123374 , 040_K21.ab1: 121439-123376 , 052_E23.ab1: 122335-123376

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002742_050 0.0 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
2 Hb_004052_020 0.0977888279 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
3 Hb_001214_140 0.0979175327 - - 60S ribosomal protein L27a, putative [Ricinus communis]
4 Hb_000057_070 0.1062995779 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
5 Hb_009486_150 0.1108851392 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
6 Hb_000565_030 0.1110439336 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
7 Hb_005496_030 0.1124671161 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
8 Hb_000526_040 0.1138911361 - - 60S ribosomal protein L6, putative [Ricinus communis]
9 Hb_002716_090 0.1214117904 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
10 Hb_003528_060 0.1229791724 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
11 Hb_009787_010 0.1244949085 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
12 Hb_001946_210 0.1245257285 - - ribosomal protein l7ae, putative [Ricinus communis]
13 Hb_012573_070 0.1258152698 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002301_130 0.1283139391 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
15 Hb_001538_120 0.1291170642 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
16 Hb_012753_230 0.1306718716 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
17 Hb_003641_020 0.1306800237 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
18 Hb_064264_010 0.1307330575 - - hypothetical protein [Zea mays]
19 Hb_009554_010 0.1310518003 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
20 Hb_001638_260 0.1313633044 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]

Gene co-expression network

sample Hb_002742_050 Hb_002742_050 Hb_004052_020 Hb_004052_020 Hb_002742_050--Hb_004052_020 Hb_001214_140 Hb_001214_140 Hb_002742_050--Hb_001214_140 Hb_000057_070 Hb_000057_070 Hb_002742_050--Hb_000057_070 Hb_009486_150 Hb_009486_150 Hb_002742_050--Hb_009486_150 Hb_000565_030 Hb_000565_030 Hb_002742_050--Hb_000565_030 Hb_005496_030 Hb_005496_030 Hb_002742_050--Hb_005496_030 Hb_012753_230 Hb_012753_230 Hb_004052_020--Hb_012753_230 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_002716_090 Hb_002716_090 Hb_001214_140--Hb_002716_090 Hb_000438_220 Hb_000438_220 Hb_001214_140--Hb_000438_220 Hb_001638_260 Hb_001638_260 Hb_001214_140--Hb_001638_260 Hb_001214_140--Hb_004052_020 Hb_003641_020 Hb_003641_020 Hb_001214_140--Hb_003641_020 Hb_001538_120 Hb_001538_120 Hb_000057_070--Hb_001538_120 Hb_000545_150 Hb_000545_150 Hb_000057_070--Hb_000545_150 Hb_000057_070--Hb_012573_070 Hb_000526_150 Hb_000526_150 Hb_000057_070--Hb_000526_150 Hb_000057_070--Hb_012753_230 Hb_175215_010 Hb_175215_010 Hb_009486_150--Hb_175215_010 Hb_009486_150--Hb_004052_020 Hb_021419_020 Hb_021419_020 Hb_009486_150--Hb_021419_020 Hb_009486_150--Hb_000565_030 Hb_002301_130 Hb_002301_130 Hb_009486_150--Hb_002301_130 Hb_007441_210 Hb_007441_210 Hb_009486_150--Hb_007441_210 Hb_000157_090 Hb_000157_090 Hb_000565_030--Hb_000157_090 Hb_000565_030--Hb_004052_020 Hb_000565_030--Hb_012573_070 Hb_001314_100 Hb_001314_100 Hb_000565_030--Hb_001314_100 Hb_000526_040 Hb_000526_040 Hb_005496_030--Hb_000526_040 Hb_005496_030--Hb_000545_150 Hb_005496_030--Hb_001638_260 Hb_001247_350 Hb_001247_350 Hb_005496_030--Hb_001247_350 Hb_005496_030--Hb_002716_090 Hb_000617_090 Hb_000617_090 Hb_005496_030--Hb_000617_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
188.729 69.8984 134.288 119.554 153.134 326.709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
286.874 752.965 86.3629 109.649 25.3981

CAGE analysis