Hb_001214_140

Information

Type -
Description -
Location Contig1214: 148048-148488
Sequence    

Annotation

kegg
ID rcu:RCOM_1508910
description 60S ribosomal protein L27a, putative
nr
ID XP_002511333.1
description 60S ribosomal protein L27a, putative [Ricinus communis]
swissprot
ID P49637
description 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2
trembl
ID B9RAV8
description 60S ribosomal protein L27a, putative OS=Ricinus communis GN=RCOM_1508910 PE=3 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l27a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06561: 147985-148629
cDNA
(Sanger)
(ID:Location)		 006_K19.ab1: 148033-148621 , 027_D12.ab1: 147985-148508

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001214_140 0.0 - - 60S ribosomal protein L27a, putative [Ricinus communis]
2 Hb_002716_090 0.0916026984 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
3 Hb_000438_220 0.0961687891 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
4 Hb_001638_260 0.0969296662 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
5 Hb_002742_050 0.0979175327 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
6 Hb_004052_020 0.099000456 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
7 Hb_003641_020 0.0993221783 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
8 Hb_000062_650 0.1022365861 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
9 Hb_026398_010 0.1075187836 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
10 Hb_009554_010 0.108082877 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
11 Hb_012368_020 0.1094925399 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
12 Hb_004005_010 0.1098963066 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
13 Hb_000699_040 0.110024363 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
14 Hb_012753_230 0.1106572203 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
15 Hb_003638_080 0.1122959209 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
16 Hb_011311_010 0.1124553968 - - 60S ribosomal protein L27C [Hevea brasiliensis]
17 Hb_097007_010 0.1126065744 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
18 Hb_000526_040 0.1155469451 - - 60S ribosomal protein L6, putative [Ricinus communis]
19 Hb_000042_260 0.1173591547 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
20 Hb_002316_060 0.1177825278 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]

Gene co-expression network

sample Hb_001214_140 Hb_001214_140 Hb_002716_090 Hb_002716_090 Hb_001214_140--Hb_002716_090 Hb_000438_220 Hb_000438_220 Hb_001214_140--Hb_000438_220 Hb_001638_260 Hb_001638_260 Hb_001214_140--Hb_001638_260 Hb_002742_050 Hb_002742_050 Hb_001214_140--Hb_002742_050 Hb_004052_020 Hb_004052_020 Hb_001214_140--Hb_004052_020 Hb_003641_020 Hb_003641_020 Hb_001214_140--Hb_003641_020 Hb_001247_350 Hb_001247_350 Hb_002716_090--Hb_001247_350 Hb_002716_090--Hb_001638_260 Hb_003927_140 Hb_003927_140 Hb_002716_090--Hb_003927_140 Hb_005496_030 Hb_005496_030 Hb_002716_090--Hb_005496_030 Hb_009554_010 Hb_009554_010 Hb_002716_090--Hb_009554_010 Hb_002316_060 Hb_002316_060 Hb_000438_220--Hb_002316_060 Hb_000438_220--Hb_003641_020 Hb_012368_020 Hb_012368_020 Hb_000438_220--Hb_012368_020 Hb_004129_040 Hb_004129_040 Hb_000438_220--Hb_004129_040 Hb_000307_090 Hb_000307_090 Hb_000438_220--Hb_000307_090 Hb_000438_220--Hb_001638_260 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_000545_150 Hb_000545_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020 Hb_002742_050--Hb_004052_020 Hb_000057_070 Hb_000057_070 Hb_002742_050--Hb_000057_070 Hb_009486_150 Hb_009486_150 Hb_002742_050--Hb_009486_150 Hb_000565_030 Hb_000565_030 Hb_002742_050--Hb_000565_030 Hb_002742_050--Hb_005496_030 Hb_012753_230 Hb_012753_230 Hb_004052_020--Hb_012753_230 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_003641_020--Hb_012368_020 Hb_000062_650 Hb_000062_650 Hb_003641_020--Hb_000062_650 Hb_003641_020--Hb_001638_260 Hb_001314_100 Hb_001314_100 Hb_003641_020--Hb_001314_100 Hb_003641_020--Hb_012573_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.412 86.1541 80.0578 120.23 136.166 198.603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
276.33 662.773 109.452 70.0353 35.743

CAGE analysis