Hb_002316_060

Information

Type -
Description -
Location Contig2316: 44667-45179
Sequence    

Annotation

kegg
ID rcu:RCOM_1511590
description hypothetical protein
nr
ID XP_012080100.1
description PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4Q7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11503 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24363: 44524-45540
cDNA
(Sanger)
(ID:Location)		 028_M10.ab1: 44524-45293

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002316_060 0.0 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
2 Hb_000438_220 0.0710320185 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
3 Hb_000196_050 0.0846088892 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
4 Hb_003943_130 0.0981603677 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
5 Hb_001369_640 0.101461169 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
6 Hb_001314_100 0.1016468403 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
7 Hb_001946_210 0.1029390963 - - ribosomal protein l7ae, putative [Ricinus communis]
8 Hb_003939_080 0.1051706014 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001638_260 0.1053114249 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
10 Hb_003641_020 0.1081744332 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
11 Hb_000526_040 0.1087549997 - - 60S ribosomal protein L6, putative [Ricinus communis]
12 Hb_000970_010 0.1099493896 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
13 Hb_002182_060 0.1104471259 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
14 Hb_012368_020 0.1108227657 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
15 Hb_005496_030 0.1112823204 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
16 Hb_001269_270 0.1114976493 - - 60S ribosomal protein L27B [Hevea brasiliensis]
17 Hb_023732_070 0.1116219962 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
18 Hb_001080_080 0.1132678863 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
19 Hb_004724_160 0.1151023965 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
20 Hb_000094_020 0.1170053538 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]

Gene co-expression network

sample Hb_002316_060 Hb_002316_060 Hb_000438_220 Hb_000438_220 Hb_002316_060--Hb_000438_220 Hb_000196_050 Hb_000196_050 Hb_002316_060--Hb_000196_050 Hb_003943_130 Hb_003943_130 Hb_002316_060--Hb_003943_130 Hb_001369_640 Hb_001369_640 Hb_002316_060--Hb_001369_640 Hb_001314_100 Hb_001314_100 Hb_002316_060--Hb_001314_100 Hb_001946_210 Hb_001946_210 Hb_002316_060--Hb_001946_210 Hb_003641_020 Hb_003641_020 Hb_000438_220--Hb_003641_020 Hb_012368_020 Hb_012368_020 Hb_000438_220--Hb_012368_020 Hb_004129_040 Hb_004129_040 Hb_000438_220--Hb_004129_040 Hb_000307_090 Hb_000307_090 Hb_000438_220--Hb_000307_090 Hb_001638_260 Hb_001638_260 Hb_000438_220--Hb_001638_260 Hb_003683_040 Hb_003683_040 Hb_000196_050--Hb_003683_040 Hb_000184_050 Hb_000184_050 Hb_000196_050--Hb_000184_050 Hb_009554_010 Hb_009554_010 Hb_000196_050--Hb_009554_010 Hb_000815_260 Hb_000815_260 Hb_000196_050--Hb_000815_260 Hb_031042_010 Hb_031042_010 Hb_000196_050--Hb_031042_010 Hb_003943_130--Hb_001369_640 Hb_002289_120 Hb_002289_120 Hb_003943_130--Hb_002289_120 Hb_000152_420 Hb_000152_420 Hb_003943_130--Hb_000152_420 Hb_001538_090 Hb_001538_090 Hb_003943_130--Hb_001538_090 Hb_006909_030 Hb_006909_030 Hb_003943_130--Hb_006909_030 Hb_001369_640--Hb_000152_420 Hb_000690_180 Hb_000690_180 Hb_001369_640--Hb_000690_180 Hb_001369_640--Hb_001314_100 Hb_001369_640--Hb_002289_120 Hb_134949_020 Hb_134949_020 Hb_001369_640--Hb_134949_020 Hb_012573_070 Hb_012573_070 Hb_001314_100--Hb_012573_070 Hb_168054_010 Hb_168054_010 Hb_001314_100--Hb_168054_010 Hb_165132_010 Hb_165132_010 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_001314_100--Hb_134949_020 Hb_003939_080 Hb_003939_080 Hb_001946_210--Hb_003939_080 Hb_002868_010 Hb_002868_010 Hb_001946_210--Hb_002868_010 Hb_000101_270 Hb_000101_270 Hb_001946_210--Hb_000101_270 Hb_046049_010 Hb_046049_010 Hb_001946_210--Hb_046049_010 Hb_000380_190 Hb_000380_190 Hb_001946_210--Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_001946_210--Hb_002311_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.228 77.0007 43.206 52.1546 55.1162 146.244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
165.656 295.487 89.717 42.1516 14.8285

CAGE analysis