Hb_006909_030

Information

Type -
Description -
Location Contig6909: 45185-45616
Sequence    

Annotation

kegg
ID cmo:103496520
description 40S ribosomal protein S17-3
nr
ID ADR71228.1
description 40S ribosomal protein S17B [Hevea brasiliensis]
swissprot
ID Q9SQZ1
description 40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3
trembl
ID I3NMJ1
description 40S ribosomal protein S17B OS=Hevea brasiliensis GN=RPS17B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54332: 43819-45883
cDNA
(Sanger)
(ID:Location)		 003_A21.ab1: 43913-45827 , 005_P10.ab1: 43917-45821 , 017_O24.ab1: 43906-45794 , 023_M01.ab1: 43917-45821 , 027_H24.ab1: 43917-45821 , 034_I06.ab1: 43819-45785 , 035_H07.ab1: 43906-45794 , 047_B14.ab1: 43917-45821 , 050_H12.ab1: 43906-45768

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006909_030 0.0 - - 40S ribosomal protein S17B [Hevea brasiliensis]
2 Hb_004306_020 0.0805588988 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
3 Hb_005686_060 0.0845937636 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
4 Hb_004705_100 0.0994638584 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
5 Hb_004545_060 0.099821413 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
6 Hb_000045_090 0.1027305902 - - PREDICTED: syntaxin-31 [Jatropha curcas]
7 Hb_010180_020 0.1035409022 - - hypothetical protein glysoja_030394 [Glycine soja]
8 Hb_003943_130 0.1042435279 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
9 Hb_002078_150 0.1080561485 - - protein with unknown function [Ricinus communis]
10 Hb_001369_660 0.1084583039 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
11 Hb_000780_060 0.1101639673 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
12 Hb_002217_310 0.1103335513 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
13 Hb_001538_090 0.1114583044 - - 40S ribosomal protein S29 [Morus notabilis]
14 Hb_000343_160 0.1123297938 - - PREDICTED: protein SYS1 homolog [Jatropha curcas]
15 Hb_000024_080 0.1128189826 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
16 Hb_000620_080 0.1141375537 - - hypothetical protein F775_32679 [Aegilops tauschii]
17 Hb_010180_010 0.1141623223 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
18 Hb_001369_640 0.1147435868 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
19 Hb_141131_010 0.1155237323 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
20 Hb_010172_080 0.1156324894 - - acetylglucosaminyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006909_030 Hb_006909_030 Hb_004306_020 Hb_004306_020 Hb_006909_030--Hb_004306_020 Hb_005686_060 Hb_005686_060 Hb_006909_030--Hb_005686_060 Hb_004705_100 Hb_004705_100 Hb_006909_030--Hb_004705_100 Hb_004545_060 Hb_004545_060 Hb_006909_030--Hb_004545_060 Hb_000045_090 Hb_000045_090 Hb_006909_030--Hb_000045_090 Hb_010180_020 Hb_010180_020 Hb_006909_030--Hb_010180_020 Hb_004306_020--Hb_010180_020 Hb_010180_010 Hb_010180_010 Hb_004306_020--Hb_010180_010 Hb_004306_020--Hb_004545_060 Hb_002207_110 Hb_002207_110 Hb_004306_020--Hb_002207_110 Hb_000024_080 Hb_000024_080 Hb_004306_020--Hb_000024_080 Hb_004306_020--Hb_005686_060 Hb_005686_060--Hb_004705_100 Hb_005686_060--Hb_000045_090 Hb_010172_080 Hb_010172_080 Hb_005686_060--Hb_010172_080 Hb_009773_020 Hb_009773_020 Hb_005686_060--Hb_009773_020 Hb_000510_130 Hb_000510_130 Hb_005686_060--Hb_000510_130 Hb_002078_150 Hb_002078_150 Hb_005686_060--Hb_002078_150 Hb_092337_010 Hb_092337_010 Hb_004705_100--Hb_092337_010 Hb_004705_100--Hb_010172_080 Hb_000700_110 Hb_000700_110 Hb_004705_100--Hb_000700_110 Hb_000692_220 Hb_000692_220 Hb_004705_100--Hb_000692_220 Hb_004705_100--Hb_009773_020 Hb_004545_060--Hb_010180_020 Hb_004545_060--Hb_000045_090 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_003038_030 Hb_003038_030 Hb_004545_060--Hb_003038_030 Hb_002774_060 Hb_002774_060 Hb_000045_090--Hb_002774_060 Hb_009557_070 Hb_009557_070 Hb_000045_090--Hb_009557_070 Hb_000329_030 Hb_000329_030 Hb_000045_090--Hb_000329_030 Hb_143398_010 Hb_143398_010 Hb_000045_090--Hb_143398_010 Hb_001604_080 Hb_001604_080 Hb_010180_020--Hb_001604_080 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_010180_020--Hb_000024_080 Hb_000815_040 Hb_000815_040 Hb_010180_020--Hb_000815_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
740.318 399.471 292.686 883.221 499.644 1253.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
925.029 1240.1 741.927 279.296 95.4785

CAGE analysis