Hb_000815_260

Information

Type -
Description -
Location Contig815: 268669-269924
Sequence    

Annotation

kegg
ID rcu:RCOM_0837620
description hypothetical protein
nr
ID ADR71288.1
description 50S ribosomal protein L32pA [Hevea brasiliensis]
swissprot
ID -
description -
trembl
ID I3NMQ1
description 50S ribosomal protein L32pA OS=Hevea brasiliensis GN=RPL32pA PE=2 SV=1
Gene Ontology
ID GO:0015934
description ribosomal l32p protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59368: 268749-270917
cDNA
(Sanger)
(ID:Location)		 034_A16.ab1: 268756-270915 , 053_D12.ab1: 268756-270909

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_260 0.0 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
2 Hb_000184_050 0.0765530603 - - NOI, putative [Ricinus communis]
3 Hb_130291_010 0.0878718407 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
4 Hb_004724_160 0.0915191787 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
5 Hb_002701_050 0.0916597914 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
6 Hb_000975_110 0.0918507651 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
7 Hb_001433_050 0.0931864358 - - 60S ribosomal protein L18, putative [Ricinus communis]
8 Hb_148930_010 0.0936319415 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
9 Hb_010883_150 0.095634596 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
10 Hb_003683_040 0.0972840523 - - unnamed protein product [Coffea canephora]
11 Hb_000196_050 0.0974618097 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
12 Hb_003893_090 0.0980282205 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
13 Hb_001383_060 0.0983144347 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_009554_010 0.0991288952 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
15 Hb_000024_030 0.0991689313 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
16 Hb_006816_530 0.1000197001 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_142898_010 0.1000804638 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008847_020 0.1003224319 - - 40S ribosomal protein S17C [Hevea brasiliensis]
19 Hb_000199_070 0.1020016297 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001214_160 0.1038433847 - - 60S ribosomal protein L27B [Hevea brasiliensis]

Gene co-expression network

sample Hb_000815_260 Hb_000815_260 Hb_000184_050 Hb_000184_050 Hb_000815_260--Hb_000184_050 Hb_130291_010 Hb_130291_010 Hb_000815_260--Hb_130291_010 Hb_004724_160 Hb_004724_160 Hb_000815_260--Hb_004724_160 Hb_002701_050 Hb_002701_050 Hb_000815_260--Hb_002701_050 Hb_000975_110 Hb_000975_110 Hb_000815_260--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000815_260--Hb_001433_050 Hb_000184_050--Hb_130291_010 Hb_003683_040 Hb_003683_040 Hb_000184_050--Hb_003683_040 Hb_008847_020 Hb_008847_020 Hb_000184_050--Hb_008847_020 Hb_000196_050 Hb_000196_050 Hb_000184_050--Hb_000196_050 Hb_010883_150 Hb_010883_150 Hb_000184_050--Hb_010883_150 Hb_012265_010 Hb_012265_010 Hb_130291_010--Hb_012265_010 Hb_130291_010--Hb_001433_050 Hb_000024_030 Hb_000024_030 Hb_130291_010--Hb_000024_030 Hb_000199_070 Hb_000199_070 Hb_130291_010--Hb_000199_070 Hb_130291_010--Hb_000975_110 Hb_011311_010 Hb_011311_010 Hb_004724_160--Hb_011311_010 Hb_001248_080 Hb_001248_080 Hb_004724_160--Hb_001248_080 Hb_001269_270 Hb_001269_270 Hb_004724_160--Hb_001269_270 Hb_001268_140 Hb_001268_140 Hb_004724_160--Hb_001268_140 Hb_148930_010 Hb_148930_010 Hb_004724_160--Hb_148930_010 Hb_001045_080 Hb_001045_080 Hb_004724_160--Hb_001045_080 Hb_004007_100 Hb_004007_100 Hb_002701_050--Hb_004007_100 Hb_002701_050--Hb_000199_070 Hb_015175_030 Hb_015175_030 Hb_002701_050--Hb_015175_030 Hb_001242_110 Hb_001242_110 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_148209_080 Hb_148209_080 Hb_002701_050--Hb_148209_080 Hb_000975_110--Hb_000024_030 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_000975_110--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_001433_050--Hb_000024_030 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_001433_050--Hb_148930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.3353 28.7909 18.3555 39.7738 38.0668 94.5973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
135.952 163.378 84.8797 52.8664 5.41421

CAGE analysis