Hb_031042_010

Information

Type -
Description -
Location Contig31042: 6013-8545
Sequence    

Annotation

kegg
ID cit:102628427
description hypothetical protein
nr
ID KDP39878.1
description hypothetical protein JCGZ_03409 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03409 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32845: 6270-8513 , PASA_asmbl_32846: 6189-8511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031042_010 0.0 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
2 Hb_000196_050 0.10091638 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
3 Hb_004007_100 0.1013980896 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
4 Hb_000500_060 0.1083197977 - - BnaC08g21190D [Brassica napus]
5 Hb_007441_270 0.1096369947 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
6 Hb_002701_050 0.1238852322 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
7 Hb_000561_020 0.1262278242 - - hypothetical protein JCGZ_19196 [Jatropha curcas]
8 Hb_000108_140 0.1286466818 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
9 Hb_003683_040 0.1320872429 - - unnamed protein product [Coffea canephora]
10 Hb_001635_080 0.1325257652 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
11 Hb_000347_340 0.1335259437 - - ring finger, putative [Ricinus communis]
12 Hb_003943_130 0.1346751434 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
13 Hb_001322_150 0.1357978391 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
14 Hb_006909_030 0.1385123044 - - 40S ribosomal protein S17B [Hevea brasiliensis]
15 Hb_005260_020 0.1399789901 - - PREDICTED: uncharacterized protein LOC105633789 [Jatropha curcas]
16 Hb_067776_010 0.1429909424 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
17 Hb_015175_030 0.1443565452 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
18 Hb_001242_110 0.1445055364 - - 40S ribosomal protein S18, putative [Ricinus communis]
19 Hb_009554_010 0.1445426448 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
20 Hb_000156_130 0.1448019084 - - hypothetical protein JCGZ_04605 [Jatropha curcas]

Gene co-expression network

sample Hb_031042_010 Hb_031042_010 Hb_000196_050 Hb_000196_050 Hb_031042_010--Hb_000196_050 Hb_004007_100 Hb_004007_100 Hb_031042_010--Hb_004007_100 Hb_000500_060 Hb_000500_060 Hb_031042_010--Hb_000500_060 Hb_007441_270 Hb_007441_270 Hb_031042_010--Hb_007441_270 Hb_002701_050 Hb_002701_050 Hb_031042_010--Hb_002701_050 Hb_000561_020 Hb_000561_020 Hb_031042_010--Hb_000561_020 Hb_003683_040 Hb_003683_040 Hb_000196_050--Hb_003683_040 Hb_002316_060 Hb_002316_060 Hb_000196_050--Hb_002316_060 Hb_000184_050 Hb_000184_050 Hb_000196_050--Hb_000184_050 Hb_009554_010 Hb_009554_010 Hb_000196_050--Hb_009554_010 Hb_000815_260 Hb_000815_260 Hb_000196_050--Hb_000815_260 Hb_004007_100--Hb_002701_050 Hb_008173_120 Hb_008173_120 Hb_004007_100--Hb_008173_120 Hb_148209_080 Hb_148209_080 Hb_004007_100--Hb_148209_080 Hb_000684_230 Hb_000684_230 Hb_004007_100--Hb_000684_230 Hb_001242_110 Hb_001242_110 Hb_004007_100--Hb_001242_110 Hb_000500_060--Hb_007441_270 Hb_000500_060--Hb_000196_050 Hb_000500_060--Hb_002701_050 Hb_000108_140 Hb_000108_140 Hb_000500_060--Hb_000108_140 Hb_000199_070 Hb_000199_070 Hb_000500_060--Hb_000199_070 Hb_000003_730 Hb_000003_730 Hb_007441_270--Hb_000003_730 Hb_007441_270--Hb_000684_230 Hb_067776_010 Hb_067776_010 Hb_007441_270--Hb_067776_010 Hb_001269_320 Hb_001269_320 Hb_007441_270--Hb_001269_320 Hb_004502_020 Hb_004502_020 Hb_007441_270--Hb_004502_020 Hb_002701_050--Hb_000199_070 Hb_015175_030 Hb_015175_030 Hb_002701_050--Hb_015175_030 Hb_002701_050--Hb_001242_110 Hb_000526_040 Hb_000526_040 Hb_002701_050--Hb_000526_040 Hb_002701_050--Hb_148209_080 Hb_000561_020--Hb_000196_050 Hb_003943_130 Hb_003943_130 Hb_000561_020--Hb_003943_130 Hb_000561_020--Hb_000500_060 Hb_000561_020--Hb_009554_010 Hb_000561_020--Hb_003683_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.3405 7.78154 1.79227 8.50945 5.17781 19.9264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7831 22.5521 7.78928 6.72075 1.00614

CAGE analysis