Hb_007441_210

Information

Type -
Description -
Location Contig7441: 127400-129544
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05130g
description hypothetical protein
nr
ID XP_007209764.1
description hypothetical protein PRUPE_ppa013350mg [Prunus persica]
swissprot
ID Q9XHE4
description 60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1
trembl
ID M5WNW1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56628: 127423-129419 , PASA_asmbl_56629: 130177-130625
cDNA
(Sanger)
(ID:Location)		 003_F14.ab1: 127423-129419

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007441_210 0.0 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
2 Hb_013405_060 0.0684064831 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
3 Hb_028841_030 0.0916343596 - - -
4 Hb_004363_010 0.0954918755 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
5 Hb_021419_020 0.0970661287 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
6 Hb_000742_140 0.0985109052 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000084_290 0.1021688682 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
8 Hb_003939_080 0.1051615567 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002868_010 0.1055383303 - - 60S ribosomal protein L30, putative [Ricinus communis]
10 Hb_000000_160 0.1076404203 - - PREDICTED: membrin-11 [Jatropha curcas]
11 Hb_009486_150 0.1096189787 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
12 Hb_010407_040 0.1096708634 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
13 Hb_003363_110 0.1101061656 - - protein with unknown function [Ricinus communis]
14 Hb_001369_660 0.1101402443 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
15 Hb_003687_110 0.1105242725 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
16 Hb_002983_010 0.1105522395 - - F-box family protein [Populus trichocarpa]
17 Hb_000473_040 0.1116395111 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
18 Hb_000457_110 0.1116758175 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
19 Hb_011381_060 0.1127073026 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
20 Hb_000163_160 0.1128367028 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]

Gene co-expression network

sample Hb_007441_210 Hb_007441_210 Hb_013405_060 Hb_013405_060 Hb_007441_210--Hb_013405_060 Hb_028841_030 Hb_028841_030 Hb_007441_210--Hb_028841_030 Hb_004363_010 Hb_004363_010 Hb_007441_210--Hb_004363_010 Hb_021419_020 Hb_021419_020 Hb_007441_210--Hb_021419_020 Hb_000742_140 Hb_000742_140 Hb_007441_210--Hb_000742_140 Hb_000084_290 Hb_000084_290 Hb_007441_210--Hb_000084_290 Hb_008112_040 Hb_008112_040 Hb_013405_060--Hb_008112_040 Hb_011381_060 Hb_011381_060 Hb_013405_060--Hb_011381_060 Hb_007154_020 Hb_007154_020 Hb_013405_060--Hb_007154_020 Hb_002868_010 Hb_002868_010 Hb_013405_060--Hb_002868_010 Hb_013405_060--Hb_028841_030 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_005186_050 Hb_005186_050 Hb_028841_030--Hb_005186_050 Hb_028841_030--Hb_011381_060 Hb_003607_150 Hb_003607_150 Hb_028841_030--Hb_003607_150 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010 Hb_002292_010 Hb_002292_010 Hb_004363_010--Hb_002292_010 Hb_000976_260 Hb_000976_260 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_004363_010--Hb_008112_040 Hb_007007_050 Hb_007007_050 Hb_004363_010--Hb_007007_050 Hb_002811_260 Hb_002811_260 Hb_021419_020--Hb_002811_260 Hb_004787_060 Hb_004787_060 Hb_021419_020--Hb_004787_060 Hb_001504_020 Hb_001504_020 Hb_021419_020--Hb_001504_020 Hb_002112_020 Hb_002112_020 Hb_021419_020--Hb_002112_020 Hb_000286_070 Hb_000286_070 Hb_021419_020--Hb_000286_070 Hb_003292_040 Hb_003292_040 Hb_021419_020--Hb_003292_040 Hb_000714_030 Hb_000714_030 Hb_000742_140--Hb_000714_030 Hb_000742_140--Hb_000084_290 Hb_000933_180 Hb_000933_180 Hb_000742_140--Hb_000933_180 Hb_009767_120 Hb_009767_120 Hb_000742_140--Hb_009767_120 Hb_011828_050 Hb_011828_050 Hb_000742_140--Hb_011828_050 Hb_000462_140 Hb_000462_140 Hb_000742_140--Hb_000462_140 Hb_025236_040 Hb_025236_040 Hb_000084_290--Hb_025236_040 Hb_000084_290--Hb_009767_120 Hb_000084_290--Hb_011828_050 Hb_000349_060 Hb_000349_060 Hb_000084_290--Hb_000349_060 Hb_002983_010 Hb_002983_010 Hb_000084_290--Hb_002983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.384 40.3131 91.5724 43.3372 82.9445 129.377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.8484 176.112 47.7908 19.4708 16.7546

CAGE analysis