Hb_002112_020

Information

Type -
Description -
Location Contig2112: 41717-44661
Sequence    

Annotation

kegg
ID rcu:RCOM_1315040
description 60S ribosomal protein L9, putative
nr
ID XP_002518960.1
description 60S ribosomal protein L9, putative [Ricinus communis]
swissprot
ID P49210
description 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3
trembl
ID B9RYZ1
description 60S ribosomal protein L9, putative OS=Ricinus communis GN=RCOM_1315040 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21904: 41729-43520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002112_020 0.0 - - 60S ribosomal protein L9, putative [Ricinus communis]
2 Hb_001504_020 0.0552675171 - - 40S ribosomal protein S12A [Hevea brasiliensis]
3 Hb_021419_020 0.0701865502 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
4 Hb_010921_010 0.0827060725 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
5 Hb_002660_080 0.0866449015 - - 60S ribosomal protein L12A [Hevea brasiliensis]
6 Hb_128048_010 0.0882771182 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
7 Hb_175215_010 0.0886282495 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
8 Hb_004116_060 0.0894515928 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
9 Hb_024071_020 0.0911274102 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
10 Hb_027472_040 0.0915259522 - - SKP1 [Hevea brasiliensis]
11 Hb_000093_160 0.0926487146 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
12 Hb_000012_220 0.0928567469 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002868_010 0.0948033811 - - 60S ribosomal protein L30, putative [Ricinus communis]
14 Hb_004096_090 0.0949445988 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
15 Hb_002234_140 0.0958248796 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
16 Hb_003935_020 0.096139624 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_002811_260 0.0963155417 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
18 Hb_000610_050 0.0964586885 - - skp1, putative [Ricinus communis]
19 Hb_004787_060 0.0973268127 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
20 Hb_001534_120 0.0984691347 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]

Gene co-expression network

sample Hb_002112_020 Hb_002112_020 Hb_001504_020 Hb_001504_020 Hb_002112_020--Hb_001504_020 Hb_021419_020 Hb_021419_020 Hb_002112_020--Hb_021419_020 Hb_010921_010 Hb_010921_010 Hb_002112_020--Hb_010921_010 Hb_002660_080 Hb_002660_080 Hb_002112_020--Hb_002660_080 Hb_128048_010 Hb_128048_010 Hb_002112_020--Hb_128048_010 Hb_175215_010 Hb_175215_010 Hb_002112_020--Hb_175215_010 Hb_001504_020--Hb_021419_020 Hb_027472_040 Hb_027472_040 Hb_001504_020--Hb_027472_040 Hb_002234_140 Hb_002234_140 Hb_001504_020--Hb_002234_140 Hb_001504_020--Hb_010921_010 Hb_001504_020--Hb_175215_010 Hb_002811_260 Hb_002811_260 Hb_021419_020--Hb_002811_260 Hb_004787_060 Hb_004787_060 Hb_021419_020--Hb_004787_060 Hb_000286_070 Hb_000286_070 Hb_021419_020--Hb_000286_070 Hb_003292_040 Hb_003292_040 Hb_021419_020--Hb_003292_040 Hb_001512_060 Hb_001512_060 Hb_010921_010--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_010921_010--Hb_001534_120 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090 Hb_001358_030 Hb_001358_030 Hb_002660_080--Hb_001358_030 Hb_096563_010 Hb_096563_010 Hb_002660_080--Hb_096563_010 Hb_000056_200 Hb_000056_200 Hb_002660_080--Hb_000056_200 Hb_001226_160 Hb_001226_160 Hb_002660_080--Hb_001226_160 Hb_002226_070 Hb_002226_070 Hb_002660_080--Hb_002226_070 Hb_001489_060 Hb_001489_060 Hb_002660_080--Hb_001489_060 Hb_000926_300 Hb_000926_300 Hb_128048_010--Hb_000926_300 Hb_000000_170 Hb_000000_170 Hb_128048_010--Hb_000000_170 Hb_128048_010--Hb_002811_260 Hb_128048_010--Hb_175215_010 Hb_003878_010 Hb_003878_010 Hb_128048_010--Hb_003878_010 Hb_181288_010 Hb_181288_010 Hb_128048_010--Hb_181288_010 Hb_009486_150 Hb_009486_150 Hb_175215_010--Hb_009486_150 Hb_175215_010--Hb_004787_060 Hb_175215_010--Hb_021419_020 Hb_175215_010--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.3461 40.5976 53.8799 44.7877 58.55 85.2105
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.617 147.695 34.5521 44.2911 32.4535

CAGE analysis