Hb_001504_020

Information

Type -
Description -
Location Contig1504: 25446-27533
Sequence    

Annotation

kegg
ID cit:102613535
description 40S ribosomal protein S12-like
nr
ID ADR71311.1
description 40S ribosomal protein S12A [Hevea brasiliensis]
swissprot
ID Q9XHS0
description 40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1
trembl
ID I3NMS4
description 40S ribosomal protein S12 OS=Hevea brasiliensis GN=RPS12A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12627: 25447-27471 , PASA_asmbl_12628: 26050-26497 , PASA_asmbl_12629: 28099-29602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_020 0.0 - - 40S ribosomal protein S12A [Hevea brasiliensis]
2 Hb_002112_020 0.0552675171 - - 60S ribosomal protein L9, putative [Ricinus communis]
3 Hb_021419_020 0.0686878043 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
4 Hb_027472_040 0.0723303042 - - SKP1 [Hevea brasiliensis]
5 Hb_002234_140 0.0728389177 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
6 Hb_010921_010 0.075162771 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
7 Hb_175215_010 0.0779486976 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
8 Hb_004787_060 0.0791020873 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
9 Hb_000286_070 0.0792316489 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
10 Hb_002868_010 0.0846409447 - - 60S ribosomal protein L30, putative [Ricinus communis]
11 Hb_005322_040 0.0887609973 - - 60S ribosomal protein L9, putative [Ricinus communis]
12 Hb_015279_010 0.0904513098 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
13 Hb_001534_120 0.0913024278 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
14 Hb_001329_290 0.0931881703 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
15 Hb_003935_020 0.0940312876 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001481_090 0.0941267943 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
17 Hb_038172_010 0.0943834737 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
18 Hb_024071_020 0.0948177612 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
19 Hb_000127_180 0.0949230388 - - 40S ribosomal protein S18, putative [Ricinus communis]
20 Hb_128048_010 0.0958757929 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]

Gene co-expression network

sample Hb_001504_020 Hb_001504_020 Hb_002112_020 Hb_002112_020 Hb_001504_020--Hb_002112_020 Hb_021419_020 Hb_021419_020 Hb_001504_020--Hb_021419_020 Hb_027472_040 Hb_027472_040 Hb_001504_020--Hb_027472_040 Hb_002234_140 Hb_002234_140 Hb_001504_020--Hb_002234_140 Hb_010921_010 Hb_010921_010 Hb_001504_020--Hb_010921_010 Hb_175215_010 Hb_175215_010 Hb_001504_020--Hb_175215_010 Hb_002112_020--Hb_021419_020 Hb_002112_020--Hb_010921_010 Hb_002660_080 Hb_002660_080 Hb_002112_020--Hb_002660_080 Hb_128048_010 Hb_128048_010 Hb_002112_020--Hb_128048_010 Hb_002112_020--Hb_175215_010 Hb_002811_260 Hb_002811_260 Hb_021419_020--Hb_002811_260 Hb_004787_060 Hb_004787_060 Hb_021419_020--Hb_004787_060 Hb_000286_070 Hb_000286_070 Hb_021419_020--Hb_000286_070 Hb_003292_040 Hb_003292_040 Hb_021419_020--Hb_003292_040 Hb_000610_050 Hb_000610_050 Hb_027472_040--Hb_000610_050 Hb_003125_200 Hb_003125_200 Hb_027472_040--Hb_003125_200 Hb_029388_020 Hb_029388_020 Hb_027472_040--Hb_029388_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_027472_040--Hb_007576_080 Hb_021576_040 Hb_021576_040 Hb_002234_140--Hb_021576_040 Hb_000444_080 Hb_000444_080 Hb_002234_140--Hb_000444_080 Hb_000563_230 Hb_000563_230 Hb_002234_140--Hb_000563_230 Hb_003935_020 Hb_003935_020 Hb_002234_140--Hb_003935_020 Hb_000009_530 Hb_000009_530 Hb_002234_140--Hb_000009_530 Hb_001512_060 Hb_001512_060 Hb_010921_010--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_010921_010--Hb_001534_120 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090 Hb_175215_010--Hb_128048_010 Hb_009486_150 Hb_009486_150 Hb_175215_010--Hb_009486_150 Hb_175215_010--Hb_004787_060 Hb_175215_010--Hb_021419_020 Hb_000926_300 Hb_000926_300 Hb_175215_010--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
200.365 154.868 181.177 107.806 197.582 223.47
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
245.343 454.84 109.656 145.102 80.3095

CAGE analysis