Hb_033153_090

Information

Type -
Description -
Location Contig33153: 53453-56883
Sequence    

Annotation

kegg
ID rcu:RCOM_1012220
description 28 kDa heat- and acid-stable phosphoprotein, putative
nr
ID XP_012091694.1
description PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
swissprot
ID Q62785
description 28 kDa heat- and acid-stable phosphoprotein OS=Rattus norvegicus GN=Pdap1 PE=1 SV=1
trembl
ID A0A067JLZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21501 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34878: 53577-56844 , PASA_asmbl_34879: 55533-55747
cDNA
(Sanger)
(ID:Location)		 035_J16.ab1: 53577-56742

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033153_090 0.0 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
2 Hb_001421_060 0.0785774927 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
3 Hb_000926_300 0.0795465992 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
4 Hb_012573_070 0.0830984552 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006816_530 0.0845601698 - - 60S ribosomal protein L18, putative [Ricinus communis]
6 Hb_001476_080 0.0866295152 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
7 Hb_000815_040 0.0892452434 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
8 Hb_001016_030 0.0892658476 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
9 Hb_000152_420 0.0895462026 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
10 Hb_032202_090 0.0898780734 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
11 Hb_011781_030 0.0899837401 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
12 Hb_128048_010 0.0905737978 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
13 Hb_168054_010 0.0914513794 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
14 Hb_000340_140 0.091847276 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
15 Hb_005400_030 0.092544894 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
16 Hb_008695_040 0.092963175 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
17 Hb_009051_030 0.0935010323 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
18 Hb_003599_040 0.0941410415 - - unnamed protein product [Vitis vinifera]
19 Hb_006541_010 0.0945003038 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
20 Hb_001314_100 0.0948126276 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]

Gene co-expression network

sample Hb_033153_090 Hb_033153_090 Hb_001421_060 Hb_001421_060 Hb_033153_090--Hb_001421_060 Hb_000926_300 Hb_000926_300 Hb_033153_090--Hb_000926_300 Hb_012573_070 Hb_012573_070 Hb_033153_090--Hb_012573_070 Hb_006816_530 Hb_006816_530 Hb_033153_090--Hb_006816_530 Hb_001476_080 Hb_001476_080 Hb_033153_090--Hb_001476_080 Hb_000815_040 Hb_000815_040 Hb_033153_090--Hb_000815_040 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_000926_300--Hb_003599_040 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_000545_150 Hb_000545_150 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_001814_050 Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_001505_020 Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_003226_210 Hb_003226_210 Hb_006816_530--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_006816_530--Hb_001214_160 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_000001_060 Hb_000001_060 Hb_001476_080--Hb_000001_060 Hb_001616_040 Hb_001616_040 Hb_001476_080--Hb_001616_040 Hb_004899_370 Hb_004899_370 Hb_001476_080--Hb_004899_370 Hb_000996_140 Hb_000996_140 Hb_001476_080--Hb_000996_140 Hb_001863_430 Hb_001863_430 Hb_001476_080--Hb_001863_430 Hb_000035_370 Hb_000035_370 Hb_001476_080--Hb_000035_370 Hb_001604_080 Hb_001604_080 Hb_000815_040--Hb_001604_080 Hb_002890_140 Hb_002890_140 Hb_000815_040--Hb_002890_140 Hb_000103_560 Hb_000103_560 Hb_000815_040--Hb_000103_560 Hb_002214_040 Hb_002214_040 Hb_000815_040--Hb_002214_040 Hb_000529_190 Hb_000529_190 Hb_000815_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_000815_040--Hb_118707_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.1111 19.0119 27.5812 28.4731 23.7828 67.1281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.6759 106.293 35.2488 29.1598 22.2466

CAGE analysis