Hb_003398_130

Information

Type -
Description -
Location Contig3398: 203566-207401
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21070g
description POPTRDRAFT_227475; hypothetical protein
nr
ID XP_012451707.1
description PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
swissprot
ID Q8L3X8
description Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana GN=SCL30 PE=1 SV=1
trembl
ID A0A0D2SW68
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G201600 PE=4 SV=1
Gene Ontology
ID GO:0016607
description serine arginine-rich sc35-like splicing factor scl30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35465: 206283-206477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_130 0.0 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
2 Hb_000109_090 0.0724440556 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
3 Hb_006816_220 0.0776908526 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
4 Hb_010921_010 0.0802346727 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
5 Hb_028227_020 0.0803665497 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
6 Hb_002284_090 0.0852180623 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
7 Hb_005306_170 0.0867922516 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
8 Hb_008648_010 0.0910606543 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
9 Hb_012725_050 0.0914480462 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
10 Hb_000329_140 0.0932139456 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
11 Hb_007163_070 0.0956103748 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
12 Hb_002043_190 0.0965395132 - - rwd domain-containing protein, putative [Ricinus communis]
13 Hb_000272_020 0.0965414295 - - oxidoreductase, putative [Ricinus communis]
14 Hb_005697_060 0.0969444733 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
15 Hb_001234_080 0.0970420039 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
16 Hb_002805_270 0.0981722417 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_008055_040 0.0984157625 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
18 Hb_000486_010 0.0988151117 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
19 Hb_001662_150 0.0996897059 - - Scaffold attachment factor B1 [Medicago truncatula]
20 Hb_002687_130 0.0999750248 - - PREDICTED: uncharacterized protein LOC105631153 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003398_130 Hb_003398_130 Hb_000109_090 Hb_000109_090 Hb_003398_130--Hb_000109_090 Hb_006816_220 Hb_006816_220 Hb_003398_130--Hb_006816_220 Hb_010921_010 Hb_010921_010 Hb_003398_130--Hb_010921_010 Hb_028227_020 Hb_028227_020 Hb_003398_130--Hb_028227_020 Hb_002284_090 Hb_002284_090 Hb_003398_130--Hb_002284_090 Hb_005306_170 Hb_005306_170 Hb_003398_130--Hb_005306_170 Hb_000853_170 Hb_000853_170 Hb_000109_090--Hb_000853_170 Hb_000109_090--Hb_010921_010 Hb_003126_080 Hb_003126_080 Hb_000109_090--Hb_003126_080 Hb_002043_190 Hb_002043_190 Hb_000109_090--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000109_090--Hb_005993_040 Hb_001234_080 Hb_001234_080 Hb_006816_220--Hb_001234_080 Hb_000454_050 Hb_000454_050 Hb_006816_220--Hb_000454_050 Hb_006816_220--Hb_000109_090 Hb_000123_230 Hb_000123_230 Hb_006816_220--Hb_000123_230 Hb_000251_070 Hb_000251_070 Hb_006816_220--Hb_000251_070 Hb_001512_060 Hb_001512_060 Hb_010921_010--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_010921_010--Hb_001534_120 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_001278_110 Hb_001278_110 Hb_002284_090--Hb_001278_110 Hb_002284_090--Hb_005306_170 Hb_000392_440 Hb_000392_440 Hb_002284_090--Hb_000392_440 Hb_000486_010 Hb_000486_010 Hb_002284_090--Hb_000486_010 Hb_000887_020 Hb_000887_020 Hb_002284_090--Hb_000887_020 Hb_005306_170--Hb_012725_050 Hb_001662_150 Hb_001662_150 Hb_005306_170--Hb_001662_150 Hb_005306_170--Hb_028227_020 Hb_005306_170--Hb_001157_020 Hb_000329_140 Hb_000329_140 Hb_005306_170--Hb_000329_140 Hb_005306_170--Hb_000486_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0259 3.41319 7.74588 4.22224 14.0283 11.8906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2725 18.9545 5.74978 9.08952 6.91445

CAGE analysis