Hb_000454_050

Information

Type -
Description -
Location Contig454: 20233-27732
Sequence    

Annotation

kegg
ID vvi:100246984
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
nr
ID XP_002268405.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
swissprot
ID Q945M1
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1
trembl
ID A0A067K753
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19644 PE=4 SV=1
Gene Ontology
ID GO:0005774
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43336: 20270-27718 , PASA_asmbl_43337: 22361-22692 , PASA_asmbl_43338: 24691-25025 , PASA_asmbl_43339: 26615-26777
cDNA
(Sanger)
(ID:Location)		 043_K13.ab1: 20270-26613

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_050 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
2 Hb_001184_090 0.0780915774 - - PREDICTED: TIP41-like protein [Jatropha curcas]
3 Hb_024682_010 0.0807263412 - - sterol isomerase, putative [Ricinus communis]
4 Hb_000494_020 0.0844788986 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
5 Hb_004204_120 0.0867478466 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
6 Hb_002205_080 0.0868327257 - - 40S ribosomal protein S26, putative [Ricinus communis]
7 Hb_008175_040 0.0877225906 - - PREDICTED: sm-like protein LSM36B [Jatropha curcas]
8 Hb_000270_270 0.0895482503 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
9 Hb_004738_080 0.0897500855 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
10 Hb_000251_070 0.0900542921 - - hypothetical protein L484_010641 [Morus notabilis]
11 Hb_000832_140 0.0916929845 - - actin depolymerizing factor 4 [Hevea brasiliensis]
12 Hb_003050_080 0.0919469954 - - 40S ribosomal protein S14, putative [Ricinus communis]
13 Hb_012725_050 0.0921528632 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
14 Hb_011381_060 0.093395108 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
15 Hb_182305_020 0.0938927183 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
16 Hb_001328_040 0.0939688498 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
17 Hb_000331_080 0.0940396426 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
18 Hb_002686_020 0.0948669745 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
19 Hb_063716_050 0.095100602 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
20 Hb_000928_240 0.0952019791 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]

Gene co-expression network

sample Hb_000454_050 Hb_000454_050 Hb_001184_090 Hb_001184_090 Hb_000454_050--Hb_001184_090 Hb_024682_010 Hb_024682_010 Hb_000454_050--Hb_024682_010 Hb_000494_020 Hb_000494_020 Hb_000454_050--Hb_000494_020 Hb_004204_120 Hb_004204_120 Hb_000454_050--Hb_004204_120 Hb_002205_080 Hb_002205_080 Hb_000454_050--Hb_002205_080 Hb_008175_040 Hb_008175_040 Hb_000454_050--Hb_008175_040 Hb_002105_090 Hb_002105_090 Hb_001184_090--Hb_002105_090 Hb_001184_090--Hb_000494_020 Hb_000000_170 Hb_000000_170 Hb_001184_090--Hb_000000_170 Hb_004800_230 Hb_004800_230 Hb_001184_090--Hb_004800_230 Hb_000832_140 Hb_000832_140 Hb_001184_090--Hb_000832_140 Hb_000887_020 Hb_000887_020 Hb_024682_010--Hb_000887_020 Hb_012725_050 Hb_012725_050 Hb_024682_010--Hb_012725_050 Hb_000127_010 Hb_000127_010 Hb_024682_010--Hb_000127_010 Hb_001157_020 Hb_001157_020 Hb_024682_010--Hb_001157_020 Hb_001328_040 Hb_001328_040 Hb_024682_010--Hb_001328_040 Hb_010407_040 Hb_010407_040 Hb_000494_020--Hb_010407_040 Hb_000494_020--Hb_002105_090 Hb_003363_110 Hb_003363_110 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_000163_160 Hb_000163_160 Hb_000494_020--Hb_000163_160 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750 Hb_000798_030 Hb_000798_030 Hb_004204_120--Hb_000798_030 Hb_001257_080 Hb_001257_080 Hb_002205_080--Hb_001257_080 Hb_000270_270 Hb_000270_270 Hb_002205_080--Hb_000270_270 Hb_001379_060 Hb_001379_060 Hb_002205_080--Hb_001379_060 Hb_007101_150 Hb_007101_150 Hb_002205_080--Hb_007101_150 Hb_001828_090 Hb_001828_090 Hb_002205_080--Hb_001828_090 Hb_003018_200 Hb_003018_200 Hb_002205_080--Hb_003018_200 Hb_008175_040--Hb_000127_010 Hb_000123_230 Hb_000123_230 Hb_008175_040--Hb_000123_230 Hb_008175_040--Hb_001328_040 Hb_182305_020 Hb_182305_020 Hb_008175_040--Hb_182305_020 Hb_000510_110 Hb_000510_110 Hb_008175_040--Hb_000510_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.6126 10.7897 41.8145 28.3737 83.0871 60.7547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.582 123.207 54.9474 31.5843 22.1876

CAGE analysis