Hb_000127_010

Information

Type -
Description -
Location Contig127: 11113-23231
Sequence    

Annotation

kegg
ID cic:CICLE_v10000379mg
description hypothetical protein
nr
ID XP_011025553.1
description PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
swissprot
ID P07742
description Ribonucleoside-diphosphate reductase large subunit OS=Mus musculus GN=Rrm1 PE=1 SV=2
trembl
ID V4TDK4
description Ribonucleoside-diphosphate reductase OS=Citrus clementina GN=CICLE_v10000379mg PE=3 SV=1
Gene Ontology
ID GO:0004748
description ribonucleoside-diphosphate reductase large subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000127_010 0.0 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
2 Hb_024682_010 0.0802287869 - - sterol isomerase, putative [Ricinus communis]
3 Hb_000887_020 0.0912007027 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
4 Hb_008175_040 0.0939667531 - - PREDICTED: sm-like protein LSM36B [Jatropha curcas]
5 Hb_000251_070 0.0942745379 - - hypothetical protein L484_010641 [Morus notabilis]
6 Hb_000454_050 0.0956387412 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
7 Hb_001053_180 0.0979988166 - - protein binding protein, putative [Ricinus communis]
8 Hb_000041_080 0.1029222074 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_000345_390 0.1031393509 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
10 Hb_004934_110 0.1071181473 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
11 Hb_003607_150 0.1104682541 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
12 Hb_004048_110 0.1182430976 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
13 Hb_004738_080 0.1191973891 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
14 Hb_000331_080 0.1192793276 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
15 Hb_004204_120 0.1197013602 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
16 Hb_000733_070 0.1202581917 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
17 Hb_004108_230 0.1202634222 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
18 Hb_001328_040 0.1203633543 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
19 Hb_000270_270 0.120745099 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
20 Hb_116349_100 0.121442915 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000127_010 Hb_000127_010 Hb_024682_010 Hb_024682_010 Hb_000127_010--Hb_024682_010 Hb_000887_020 Hb_000887_020 Hb_000127_010--Hb_000887_020 Hb_008175_040 Hb_008175_040 Hb_000127_010--Hb_008175_040 Hb_000251_070 Hb_000251_070 Hb_000127_010--Hb_000251_070 Hb_000454_050 Hb_000454_050 Hb_000127_010--Hb_000454_050 Hb_001053_180 Hb_001053_180 Hb_000127_010--Hb_001053_180 Hb_024682_010--Hb_000887_020 Hb_012725_050 Hb_012725_050 Hb_024682_010--Hb_012725_050 Hb_024682_010--Hb_000454_050 Hb_001157_020 Hb_001157_020 Hb_024682_010--Hb_001157_020 Hb_001328_040 Hb_001328_040 Hb_024682_010--Hb_001328_040 Hb_003607_050 Hb_003607_050 Hb_000887_020--Hb_003607_050 Hb_000887_020--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_000887_020--Hb_004934_110 Hb_004204_120 Hb_004204_120 Hb_000887_020--Hb_004204_120 Hb_003125_190 Hb_003125_190 Hb_000887_020--Hb_003125_190 Hb_008175_040--Hb_000454_050 Hb_000123_230 Hb_000123_230 Hb_008175_040--Hb_000123_230 Hb_008175_040--Hb_001328_040 Hb_182305_020 Hb_182305_020 Hb_008175_040--Hb_182305_020 Hb_000510_110 Hb_000510_110 Hb_008175_040--Hb_000510_110 Hb_005186_050 Hb_005186_050 Hb_000251_070--Hb_005186_050 Hb_000251_070--Hb_004934_110 Hb_001662_070 Hb_001662_070 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_003607_150 Hb_003607_150 Hb_000251_070--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_000251_070--Hb_007154_020 Hb_001184_090 Hb_001184_090 Hb_000454_050--Hb_001184_090 Hb_000494_020 Hb_000494_020 Hb_000454_050--Hb_000494_020 Hb_000454_050--Hb_004204_120 Hb_002205_080 Hb_002205_080 Hb_000454_050--Hb_002205_080 Hb_001053_180--Hb_024682_010 Hb_000096_090 Hb_000096_090 Hb_001053_180--Hb_000096_090 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_000345_390 Hb_000345_390 Hb_001053_180--Hb_000345_390 Hb_116349_100 Hb_116349_100 Hb_001053_180--Hb_116349_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.132071 0.00930806 0.0603935 0.0324488 0.0873234 0.0648181
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.153744 0.141126 0.0762118 0.0240906 0.0424545

CAGE analysis