Hb_024682_010

Information

Type -
Description -
Location Contig24682: 16366-18521
Sequence    

Annotation

kegg
ID rcu:RCOM_1438730
description sterol isomerase, putative (EC:5.3.3.5)
nr
ID XP_002512695.1
description sterol isomerase, putative [Ricinus communis]
swissprot
ID Q9FTZ2
description Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1
trembl
ID B9RG26
description Sterol isomerase, putative OS=Ricinus communis GN=RCOM_1438730 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable 3-beta-hydroxysteroid-delta -isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25624: 16836-18290 , PASA_asmbl_25626: 17877-18670
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024682_010 0.0 - - sterol isomerase, putative [Ricinus communis]
2 Hb_000887_020 0.071592039 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
3 Hb_012725_050 0.0726507901 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
4 Hb_000127_010 0.0802287869 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
5 Hb_000454_050 0.0807263412 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
6 Hb_001157_020 0.085225279 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
7 Hb_001328_040 0.0861888401 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
8 Hb_000251_070 0.088588305 - - hypothetical protein L484_010641 [Morus notabilis]
9 Hb_000331_080 0.0886623616 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
10 Hb_001053_180 0.0910231636 - - protein binding protein, putative [Ricinus communis]
11 Hb_000120_760 0.0927969865 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
12 Hb_004048_110 0.0942757276 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
13 Hb_000840_030 0.094537059 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
14 Hb_004204_120 0.0952778706 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
15 Hb_004934_110 0.0960672513 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
16 Hb_000787_050 0.0966282285 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
17 Hb_001105_030 0.0977879451 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
18 Hb_002835_240 0.0990496638 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
19 Hb_002284_090 0.1001180384 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
20 Hb_028227_020 0.101527109 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_024682_010 Hb_024682_010 Hb_000887_020 Hb_000887_020 Hb_024682_010--Hb_000887_020 Hb_012725_050 Hb_012725_050 Hb_024682_010--Hb_012725_050 Hb_000127_010 Hb_000127_010 Hb_024682_010--Hb_000127_010 Hb_000454_050 Hb_000454_050 Hb_024682_010--Hb_000454_050 Hb_001157_020 Hb_001157_020 Hb_024682_010--Hb_001157_020 Hb_001328_040 Hb_001328_040 Hb_024682_010--Hb_001328_040 Hb_003607_050 Hb_003607_050 Hb_000887_020--Hb_003607_050 Hb_000251_070 Hb_000251_070 Hb_000887_020--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_000887_020--Hb_004934_110 Hb_004204_120 Hb_004204_120 Hb_000887_020--Hb_004204_120 Hb_003125_190 Hb_003125_190 Hb_000887_020--Hb_003125_190 Hb_001105_030 Hb_001105_030 Hb_012725_050--Hb_001105_030 Hb_012725_050--Hb_001157_020 Hb_001821_010 Hb_001821_010 Hb_012725_050--Hb_001821_010 Hb_028227_020 Hb_028227_020 Hb_012725_050--Hb_028227_020 Hb_002214_040 Hb_002214_040 Hb_012725_050--Hb_002214_040 Hb_000331_080 Hb_000331_080 Hb_012725_050--Hb_000331_080 Hb_000127_010--Hb_000887_020 Hb_008175_040 Hb_008175_040 Hb_000127_010--Hb_008175_040 Hb_000127_010--Hb_000251_070 Hb_000127_010--Hb_000454_050 Hb_001053_180 Hb_001053_180 Hb_000127_010--Hb_001053_180 Hb_001184_090 Hb_001184_090 Hb_000454_050--Hb_001184_090 Hb_000494_020 Hb_000494_020 Hb_000454_050--Hb_000494_020 Hb_000454_050--Hb_004204_120 Hb_002205_080 Hb_002205_080 Hb_000454_050--Hb_002205_080 Hb_000454_050--Hb_008175_040 Hb_001157_020--Hb_028227_020 Hb_001157_020--Hb_001105_030 Hb_001157_020--Hb_001821_010 Hb_001140_370 Hb_001140_370 Hb_001157_020--Hb_001140_370 Hb_000815_320 Hb_000815_320 Hb_001157_020--Hb_000815_320 Hb_001662_070 Hb_001662_070 Hb_001328_040--Hb_001662_070 Hb_001328_040--Hb_000815_320 Hb_032264_120 Hb_032264_120 Hb_001328_040--Hb_032264_120 Hb_002811_260 Hb_002811_260 Hb_001328_040--Hb_002811_260 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.61547 0.766601 3.29236 2.86292 5.24983 4.57065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.95849 8.08983 4.47932 2.08418 3.20859

CAGE analysis