Hb_008175_040

Information

Type -
Description -
Location Contig8175: 46664-49252
Sequence    

Annotation

kegg
ID tcc:TCM_019826
description Small nuclear ribonucleoprotein family protein isoform 1
nr
ID XP_012075388.1
description PREDICTED: sm-like protein LSM36B [Jatropha curcas]
swissprot
ID O22823
description Sm-like protein LSM36B OS=Arabidopsis thaliana GN=LSM6B PE=1 SV=1
trembl
ID A0A0B0N5P8
description U6 snRNA-associated Sm-like protein LSm6 OS=Gossypium arboreum GN=F383_12084 PE=3 SV=1
Gene Ontology
ID GO:0005681
description u6 snrna-associated sm-like protein lsm6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59481: 46674-49166 , PASA_asmbl_59482: 46856-47357
cDNA
(Sanger)
(ID:Location)		 047_G19.ab1: 46674-49166

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008175_040 0.0 - - PREDICTED: sm-like protein LSM36B [Jatropha curcas]
2 Hb_000454_050 0.0877225906 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
3 Hb_000127_010 0.0939667531 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
4 Hb_000123_230 0.0996108794 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001328_040 0.1064099052 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
6 Hb_182305_020 0.1064448091 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
7 Hb_000510_110 0.1073558925 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
8 Hb_034299_050 0.1084977129 - - hypothetical protein CICLE_v10031248mg [Citrus clementina]
9 Hb_024682_010 0.1093446424 - - sterol isomerase, putative [Ricinus communis]
10 Hb_000251_070 0.1100199328 - - hypothetical protein L484_010641 [Morus notabilis]
11 Hb_002518_050 0.1122162763 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
12 Hb_001184_090 0.1195683392 - - PREDICTED: TIP41-like protein [Jatropha curcas]
13 Hb_003607_150 0.1201642478 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
14 Hb_000331_080 0.1221165843 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
15 Hb_004738_080 0.1223442159 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
16 Hb_004204_120 0.1231123901 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
17 Hb_008847_040 0.1242710341 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002205_080 0.1246180731 - - 40S ribosomal protein S26, putative [Ricinus communis]
19 Hb_009686_030 0.1250467416 - - -
20 Hb_003018_120 0.1250633124 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]

Gene co-expression network

sample Hb_008175_040 Hb_008175_040 Hb_000454_050 Hb_000454_050 Hb_008175_040--Hb_000454_050 Hb_000127_010 Hb_000127_010 Hb_008175_040--Hb_000127_010 Hb_000123_230 Hb_000123_230 Hb_008175_040--Hb_000123_230 Hb_001328_040 Hb_001328_040 Hb_008175_040--Hb_001328_040 Hb_182305_020 Hb_182305_020 Hb_008175_040--Hb_182305_020 Hb_000510_110 Hb_000510_110 Hb_008175_040--Hb_000510_110 Hb_001184_090 Hb_001184_090 Hb_000454_050--Hb_001184_090 Hb_024682_010 Hb_024682_010 Hb_000454_050--Hb_024682_010 Hb_000494_020 Hb_000494_020 Hb_000454_050--Hb_000494_020 Hb_004204_120 Hb_004204_120 Hb_000454_050--Hb_004204_120 Hb_002205_080 Hb_002205_080 Hb_000454_050--Hb_002205_080 Hb_000127_010--Hb_024682_010 Hb_000887_020 Hb_000887_020 Hb_000127_010--Hb_000887_020 Hb_000251_070 Hb_000251_070 Hb_000127_010--Hb_000251_070 Hb_000127_010--Hb_000454_050 Hb_001053_180 Hb_001053_180 Hb_000127_010--Hb_001053_180 Hb_000123_230--Hb_182305_020 Hb_000123_230--Hb_000510_110 Hb_000630_060 Hb_000630_060 Hb_000123_230--Hb_000630_060 Hb_006816_220 Hb_006816_220 Hb_000123_230--Hb_006816_220 Hb_000123_230--Hb_000454_050 Hb_001662_070 Hb_001662_070 Hb_001328_040--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001328_040--Hb_000815_320 Hb_032264_120 Hb_032264_120 Hb_001328_040--Hb_032264_120 Hb_002811_260 Hb_002811_260 Hb_001328_040--Hb_002811_260 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010 Hb_003528_060 Hb_003528_060 Hb_182305_020--Hb_003528_060 Hb_012573_070 Hb_012573_070 Hb_182305_020--Hb_012573_070 Hb_000000_170 Hb_000000_170 Hb_182305_020--Hb_000000_170 Hb_000545_150 Hb_000545_150 Hb_182305_020--Hb_000545_150 Hb_182305_020--Hb_000510_110 Hb_012022_120 Hb_012022_120 Hb_182305_020--Hb_012022_120 Hb_002518_050 Hb_002518_050 Hb_000510_110--Hb_002518_050 Hb_000029_200 Hb_000029_200 Hb_000510_110--Hb_000029_200 Hb_004931_090 Hb_004931_090 Hb_000510_110--Hb_004931_090 Hb_001300_040 Hb_001300_040 Hb_000510_110--Hb_001300_040 Hb_000510_110--Hb_012573_070 Hb_003683_110 Hb_003683_110 Hb_000510_110--Hb_003683_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.8325 3.92757 28.6871 24.4357 44.8789 24.0048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.9674 86.726 37.5701 22.8082 13.0717

CAGE analysis