Hb_001053_180

Information

Type -
Description -
Location Contig1053: 132683-136311
Sequence    

Annotation

kegg
ID rcu:RCOM_0403800
description protein binding protein, putative
nr
ID XP_002531910.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8L649
description E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1
trembl
ID B9T0Z1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0403800 PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin ligase big brother-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01797: 132678-136453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_180 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_024682_010 0.0910231636 - - sterol isomerase, putative [Ricinus communis]
3 Hb_000096_090 0.097494583 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
4 Hb_000127_010 0.0979988166 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
5 Hb_001031_080 0.1003749044 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
6 Hb_000345_390 0.100452774 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
7 Hb_116349_100 0.1023353626 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
8 Hb_000331_440 0.1101303227 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
9 Hb_000887_020 0.1102221369 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
10 Hb_001141_380 0.1138802805 - - hypothetical protein PRUPE_ppa012823mg [Prunus persica]
11 Hb_000120_760 0.1156651454 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
12 Hb_000505_010 0.1161088514 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
13 Hb_001396_180 0.1190429851 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
14 Hb_002054_010 0.1202412704 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
15 Hb_004317_040 0.1213031252 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
16 Hb_001959_070 0.123304326 - - PREDICTED: uncharacterized protein LOC105638451 isoform X1 [Jatropha curcas]
17 Hb_011316_100 0.1234269865 - - PREDICTED: glycosyltransferase family 64 protein C4-like [Jatropha curcas]
18 Hb_000316_050 0.1267409277 - - enoyl-ACP reductase [Vernicia fordii]
19 Hb_000735_130 0.1283468516 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000840_030 0.1302914294 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001053_180 Hb_001053_180 Hb_024682_010 Hb_024682_010 Hb_001053_180--Hb_024682_010 Hb_000096_090 Hb_000096_090 Hb_001053_180--Hb_000096_090 Hb_000127_010 Hb_000127_010 Hb_001053_180--Hb_000127_010 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_000345_390 Hb_000345_390 Hb_001053_180--Hb_000345_390 Hb_116349_100 Hb_116349_100 Hb_001053_180--Hb_116349_100 Hb_000887_020 Hb_000887_020 Hb_024682_010--Hb_000887_020 Hb_012725_050 Hb_012725_050 Hb_024682_010--Hb_012725_050 Hb_024682_010--Hb_000127_010 Hb_000454_050 Hb_000454_050 Hb_024682_010--Hb_000454_050 Hb_001157_020 Hb_001157_020 Hb_024682_010--Hb_001157_020 Hb_001328_040 Hb_001328_040 Hb_024682_010--Hb_001328_040 Hb_003376_040 Hb_003376_040 Hb_000096_090--Hb_003376_040 Hb_001396_180 Hb_001396_180 Hb_000096_090--Hb_001396_180 Hb_000648_110 Hb_000648_110 Hb_000096_090--Hb_000648_110 Hb_000316_050 Hb_000316_050 Hb_000096_090--Hb_000316_050 Hb_003732_020 Hb_003732_020 Hb_000096_090--Hb_003732_020 Hb_000127_010--Hb_000887_020 Hb_008175_040 Hb_008175_040 Hb_000127_010--Hb_008175_040 Hb_000251_070 Hb_000251_070 Hb_000127_010--Hb_000251_070 Hb_000127_010--Hb_000454_050 Hb_001031_080--Hb_116349_100 Hb_001031_080--Hb_000096_090 Hb_005305_090 Hb_005305_090 Hb_001031_080--Hb_005305_090 Hb_007479_050 Hb_007479_050 Hb_001031_080--Hb_007479_050 Hb_001031_080--Hb_001396_180 Hb_000345_390--Hb_116349_100 Hb_003683_120 Hb_003683_120 Hb_000345_390--Hb_003683_120 Hb_000345_390--Hb_000127_010 Hb_000345_390--Hb_024682_010 Hb_003020_020 Hb_003020_020 Hb_000345_390--Hb_003020_020 Hb_116349_100--Hb_003020_020 Hb_000505_010 Hb_000505_010 Hb_116349_100--Hb_000505_010 Hb_001959_070 Hb_001959_070 Hb_116349_100--Hb_001959_070 Hb_116349_100--Hb_000096_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2591 1.46803 14.4797 10.4549 19.6106 24.3684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9445 28.1098 22.5142 3.80796 13.771

CAGE analysis