Hb_006400_030

Information

Type -
Description -
Location Contig6400: 14447-23336
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_441970
description hypothetical protein
nr
ID EEC70340.1
description hypothetical protein OsI_01237 [Oryza sativa Indica Group]
swissprot
ID Q8NDG6
description Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9 PE=2 SV=3
trembl
ID B8ABU4
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01237 PE=4 SV=1
Gene Ontology
ID GO:0005488
description atp-dependent rna

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52154: 22193-23248 , PASA_asmbl_52155: 18712-18866 , PASA_asmbl_52156: 14575-54970 , PASA_asmbl_52157: 14508-15283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006400_030 0.0 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
2 Hb_000483_200 0.0622816843 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_003032_040 0.0638082225 - - PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Jatropha curcas]
4 Hb_006400_060 0.0689150732 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
5 Hb_005618_170 0.0699192893 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_003976_010 0.0708191255 - - methionine aminopeptidase, putative [Ricinus communis]
7 Hb_000107_620 0.0715507369 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
8 Hb_063090_010 0.0735519664 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
9 Hb_002016_110 0.0754041618 - - transducin family protein [Populus trichocarpa]
10 Hb_000613_140 0.0764381086 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
11 Hb_009838_080 0.0766380579 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
12 Hb_002183_090 0.0774852469 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
13 Hb_007441_120 0.0776601017 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
14 Hb_000085_050 0.0789032197 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_024185_020 0.0811692461 - - -
16 Hb_002449_020 0.081489121 - - PREDICTED: tRNA (guanine(9)-N1)-methyltransferase [Cucumis sativus]
17 Hb_018838_030 0.0818558722 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002214_040 0.0821920886 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_004254_120 0.0828804822 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000327_190 0.0829741246 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_006400_030 Hb_006400_030 Hb_000483_200 Hb_000483_200 Hb_006400_030--Hb_000483_200 Hb_003032_040 Hb_003032_040 Hb_006400_030--Hb_003032_040 Hb_006400_060 Hb_006400_060 Hb_006400_030--Hb_006400_060 Hb_005618_170 Hb_005618_170 Hb_006400_030--Hb_005618_170 Hb_003976_010 Hb_003976_010 Hb_006400_030--Hb_003976_010 Hb_000107_620 Hb_000107_620 Hb_006400_030--Hb_000107_620 Hb_000483_200--Hb_006400_060 Hb_007426_030 Hb_007426_030 Hb_000483_200--Hb_007426_030 Hb_000483_200--Hb_003032_040 Hb_002016_110 Hb_002016_110 Hb_000483_200--Hb_002016_110 Hb_001959_210 Hb_001959_210 Hb_000483_200--Hb_001959_210 Hb_001818_090 Hb_001818_090 Hb_003032_040--Hb_001818_090 Hb_003032_040--Hb_006400_060 Hb_024185_020 Hb_024185_020 Hb_003032_040--Hb_024185_020 Hb_002449_020 Hb_002449_020 Hb_003032_040--Hb_002449_020 Hb_000808_230 Hb_000808_230 Hb_006400_060--Hb_000808_230 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_006400_060--Hb_002016_110 Hb_005305_080 Hb_005305_080 Hb_005618_170--Hb_005305_080 Hb_004254_120 Hb_004254_120 Hb_005618_170--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_005618_170--Hb_000876_070 Hb_032202_190 Hb_032202_190 Hb_005618_170--Hb_032202_190 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050 Hb_022216_020 Hb_022216_020 Hb_003976_010--Hb_022216_020 Hb_015001_020 Hb_015001_020 Hb_003976_010--Hb_015001_020 Hb_172632_090 Hb_172632_090 Hb_003976_010--Hb_172632_090 Hb_001604_010 Hb_001604_010 Hb_003976_010--Hb_001604_010 Hb_007426_230 Hb_007426_230 Hb_003976_010--Hb_007426_230 Hb_009838_080 Hb_009838_080 Hb_000107_620--Hb_009838_080 Hb_002205_070 Hb_002205_070 Hb_000107_620--Hb_002205_070 Hb_118707_030 Hb_118707_030 Hb_000107_620--Hb_118707_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6197 2.66131 2.46274 2.32109 6.17018 7.04826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.49223 8.43011 7.61701 6.26125 3.20709

CAGE analysis