Hb_022216_020

Information

Type -
Description -
Location Contig22216: 8042-12911
Sequence    

Annotation

kegg
ID rcu:RCOM_1578400
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002513513.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q9S9N9
description Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID B9RIE4
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_1578400 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23022: 8056-12998
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022216_020 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_003976_010 0.0691156063 - - methionine aminopeptidase, putative [Ricinus communis]
3 Hb_001377_290 0.0738214042 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
4 Hb_018790_060 0.076288993 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
5 Hb_002835_410 0.0804007253 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
6 Hb_000174_090 0.0856117476 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
7 Hb_007426_230 0.0889643222 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
8 Hb_001246_090 0.0896768849 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
9 Hb_002603_100 0.0944375198 - - ATATH9, putative [Ricinus communis]
10 Hb_003018_200 0.0950209622 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
11 Hb_004108_050 0.0962432154 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
12 Hb_001008_060 0.0967180201 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
13 Hb_001604_010 0.0974313928 - - 14-3-3 protein, putative [Ricinus communis]
14 Hb_002205_080 0.0978467384 - - 40S ribosomal protein S26, putative [Ricinus communis]
15 Hb_004223_280 0.0985652434 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
16 Hb_001257_080 0.0997007063 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000613_140 0.1001644063 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
18 Hb_000009_160 0.1015384192 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
19 Hb_000189_620 0.1021024186 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
20 Hb_172632_090 0.1024349574 - - ribosomal pseudouridine synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_022216_020 Hb_022216_020 Hb_003976_010 Hb_003976_010 Hb_022216_020--Hb_003976_010 Hb_001377_290 Hb_001377_290 Hb_022216_020--Hb_001377_290 Hb_018790_060 Hb_018790_060 Hb_022216_020--Hb_018790_060 Hb_002835_410 Hb_002835_410 Hb_022216_020--Hb_002835_410 Hb_000174_090 Hb_000174_090 Hb_022216_020--Hb_000174_090 Hb_007426_230 Hb_007426_230 Hb_022216_020--Hb_007426_230 Hb_006400_030 Hb_006400_030 Hb_003976_010--Hb_006400_030 Hb_015001_020 Hb_015001_020 Hb_003976_010--Hb_015001_020 Hb_172632_090 Hb_172632_090 Hb_003976_010--Hb_172632_090 Hb_001604_010 Hb_001604_010 Hb_003976_010--Hb_001604_010 Hb_003976_010--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_001377_290--Hb_000398_180 Hb_011689_080 Hb_011689_080 Hb_001377_290--Hb_011689_080 Hb_003392_040 Hb_003392_040 Hb_001377_290--Hb_003392_040 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_004195_160 Hb_004195_160 Hb_001377_290--Hb_004195_160 Hb_002078_150 Hb_002078_150 Hb_001377_290--Hb_002078_150 Hb_000061_420 Hb_000061_420 Hb_018790_060--Hb_000061_420 Hb_000009_160 Hb_000009_160 Hb_018790_060--Hb_000009_160 Hb_001123_230 Hb_001123_230 Hb_018790_060--Hb_001123_230 Hb_000224_170 Hb_000224_170 Hb_018790_060--Hb_000224_170 Hb_005147_090 Hb_005147_090 Hb_018790_060--Hb_005147_090 Hb_182026_020 Hb_182026_020 Hb_002835_410--Hb_182026_020 Hb_000200_050 Hb_000200_050 Hb_002835_410--Hb_000200_050 Hb_001248_130 Hb_001248_130 Hb_002835_410--Hb_001248_130 Hb_000029_020 Hb_000029_020 Hb_002835_410--Hb_000029_020 Hb_000418_100 Hb_000418_100 Hb_002835_410--Hb_000418_100 Hb_000832_140 Hb_000832_140 Hb_000174_090--Hb_000832_140 Hb_002449_020 Hb_002449_020 Hb_000174_090--Hb_002449_020 Hb_000926_250 Hb_000926_250 Hb_000174_090--Hb_000926_250 Hb_000174_090--Hb_002078_150 Hb_001477_110 Hb_001477_110 Hb_000174_090--Hb_001477_110 Hb_033834_040 Hb_033834_040 Hb_000174_090--Hb_033834_040 Hb_007426_230--Hb_004195_160 Hb_002097_110 Hb_002097_110 Hb_007426_230--Hb_002097_110 Hb_004440_090 Hb_004440_090 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_007426_230--Hb_015001_020 Hb_007426_230--Hb_000398_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.261 28.6375 22.3903 28.8155 88.7386 62.5521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.9552 87.6107 84.0179 49.8076 8.83794

CAGE analysis