Hb_002835_410

Information

Type -
Description -
Location Contig2835: 367655-374684
Sequence    

Annotation

kegg
ID rcu:RCOM_1509430
description clathrin coat assembly protein ap-1, putative
nr
ID XP_002511345.1
description clathrin coat assembly protein ap-1, putative [Ricinus communis]
swissprot
ID O22715
description AP-1 complex subunit mu-2 OS=Arabidopsis thaliana GN=AP1M2 PE=1 SV=1
trembl
ID B9RAX0
description Clathrin coat assembly protein ap-1, putative OS=Ricinus communis GN=RCOM_1509430 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-1 complex subunit mu-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29669: 367688-368315 , PASA_asmbl_29670: 368460-374558 , PASA_asmbl_29671: 373391-374104
cDNA
(Sanger)
(ID:Location)		 034_B04.ab1: 371333-374513

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_410 0.0 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
2 Hb_182026_020 0.0793461107 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
3 Hb_022216_020 0.0804007253 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_000200_050 0.0806426724 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001248_130 0.0806934996 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
6 Hb_000029_020 0.0839073875 - - Vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_000418_100 0.0843351319 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]
8 Hb_000617_020 0.0845313737 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
9 Hb_000115_330 0.0852213291 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
10 Hb_015001_020 0.0861619043 - - PREDICTED: la-related protein 6B [Jatropha curcas]
11 Hb_011918_080 0.087062126 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
12 Hb_007508_070 0.0885512717 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
13 Hb_183086_060 0.0918942721 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
14 Hb_000567_260 0.0927260496 - - BnaA09g41440D [Brassica napus]
15 Hb_007426_230 0.0958937716 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
16 Hb_010638_020 0.0960947537 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
17 Hb_028872_140 0.0963667417 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
18 Hb_018790_060 0.0971512477 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
19 Hb_001811_020 0.0974692543 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000091_090 0.0980345801 - - hypothetical protein JCGZ_09031 [Jatropha curcas]

Gene co-expression network

sample Hb_002835_410 Hb_002835_410 Hb_182026_020 Hb_182026_020 Hb_002835_410--Hb_182026_020 Hb_022216_020 Hb_022216_020 Hb_002835_410--Hb_022216_020 Hb_000200_050 Hb_000200_050 Hb_002835_410--Hb_000200_050 Hb_001248_130 Hb_001248_130 Hb_002835_410--Hb_001248_130 Hb_000029_020 Hb_000029_020 Hb_002835_410--Hb_000029_020 Hb_000418_100 Hb_000418_100 Hb_002835_410--Hb_000418_100 Hb_002609_110 Hb_002609_110 Hb_182026_020--Hb_002609_110 Hb_182026_020--Hb_000418_100 Hb_011918_080 Hb_011918_080 Hb_182026_020--Hb_011918_080 Hb_000556_080 Hb_000556_080 Hb_182026_020--Hb_000556_080 Hb_002686_270 Hb_002686_270 Hb_182026_020--Hb_002686_270 Hb_010638_020 Hb_010638_020 Hb_182026_020--Hb_010638_020 Hb_003976_010 Hb_003976_010 Hb_022216_020--Hb_003976_010 Hb_001377_290 Hb_001377_290 Hb_022216_020--Hb_001377_290 Hb_018790_060 Hb_018790_060 Hb_022216_020--Hb_018790_060 Hb_000174_090 Hb_000174_090 Hb_022216_020--Hb_000174_090 Hb_007426_230 Hb_007426_230 Hb_022216_020--Hb_007426_230 Hb_006816_140 Hb_006816_140 Hb_000200_050--Hb_006816_140 Hb_001158_140 Hb_001158_140 Hb_000200_050--Hb_001158_140 Hb_004976_030 Hb_004976_030 Hb_000200_050--Hb_004976_030 Hb_016065_010 Hb_016065_010 Hb_000200_050--Hb_016065_010 Hb_003996_020 Hb_003996_020 Hb_000200_050--Hb_003996_020 Hb_020178_070 Hb_020178_070 Hb_001248_130--Hb_020178_070 Hb_000567_260 Hb_000567_260 Hb_001248_130--Hb_000567_260 Hb_189003_080 Hb_189003_080 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110 Hb_001811_020 Hb_001811_020 Hb_000029_020--Hb_001811_020 Hb_183086_060 Hb_183086_060 Hb_000029_020--Hb_183086_060 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_002687_110 Hb_002687_110 Hb_000029_020--Hb_002687_110 Hb_000115_330 Hb_000115_330 Hb_000029_020--Hb_000115_330 Hb_004109_190 Hb_004109_190 Hb_000029_020--Hb_004109_190 Hb_001720_050 Hb_001720_050 Hb_000418_100--Hb_001720_050 Hb_000062_240 Hb_000062_240 Hb_000418_100--Hb_000062_240 Hb_001030_120 Hb_001030_120 Hb_000418_100--Hb_001030_120 Hb_082609_020 Hb_082609_020 Hb_000418_100--Hb_082609_020 Hb_000418_100--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.5131 23.8678 12.2833 29.0342 84.6878 79.7171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.7875 72.7879 96.2071 46.6029 15.1601

CAGE analysis