Hb_004109_190

Information

Type -
Description -
Location Contig4109: 145888-155761
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11410g
description POPTRDRAFT_568834; UBIQUITIN-SPECIFIC PROTEASE 25 family protein
nr
ID XP_011029539.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
swissprot
ID Q9FPS2
description Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana GN=UBP25 PE=2 SV=1
trembl
ID B9I1W3
description Ubiquitin carboxyl-terminal hydrolase OS=Populus trichocarpa GN=POPTR_0011s11410g PE=3 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin carboxyl-terminal hydrolase 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40646: 145982-155683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_190 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
2 Hb_183086_060 0.0573823806 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
3 Hb_002687_110 0.0738230325 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
4 Hb_004724_420 0.0772907014 - - fucose synthetase, putative [Ricinus communis]
5 Hb_006541_030 0.0795841195 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
6 Hb_004976_030 0.0796400016 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
7 Hb_000567_260 0.080040244 - - BnaA09g41440D [Brassica napus]
8 Hb_000029_020 0.0801328855 - - Vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_000041_050 0.0818390565 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
10 Hb_000614_230 0.0823036208 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
11 Hb_000115_330 0.0833689551 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
12 Hb_009486_130 0.0836636608 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
13 Hb_001366_190 0.0852420495 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
14 Hb_000205_270 0.0863431842 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
15 Hb_154648_010 0.0864508323 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
16 Hb_007380_070 0.0867703994 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
17 Hb_005488_010 0.0869355068 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000200_050 0.0879448861 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_189003_080 0.088446542 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
20 Hb_011316_040 0.0886651836 - - peptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004109_190 Hb_004109_190 Hb_183086_060 Hb_183086_060 Hb_004109_190--Hb_183086_060 Hb_002687_110 Hb_002687_110 Hb_004109_190--Hb_002687_110 Hb_004724_420 Hb_004724_420 Hb_004109_190--Hb_004724_420 Hb_006541_030 Hb_006541_030 Hb_004109_190--Hb_006541_030 Hb_004976_030 Hb_004976_030 Hb_004109_190--Hb_004976_030 Hb_000567_260 Hb_000567_260 Hb_004109_190--Hb_000567_260 Hb_183086_060--Hb_004724_420 Hb_000029_020 Hb_000029_020 Hb_183086_060--Hb_000029_020 Hb_183086_060--Hb_002687_110 Hb_001248_130 Hb_001248_130 Hb_183086_060--Hb_001248_130 Hb_000205_270 Hb_000205_270 Hb_183086_060--Hb_000205_270 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_000041_050 Hb_000041_050 Hb_004724_420--Hb_000041_050 Hb_000700_110 Hb_000700_110 Hb_004724_420--Hb_000700_110 Hb_000614_230 Hb_000614_230 Hb_004724_420--Hb_000614_230 Hb_005289_030 Hb_005289_030 Hb_004724_420--Hb_005289_030 Hb_007380_070 Hb_007380_070 Hb_006541_030--Hb_007380_070 Hb_005539_350 Hb_005539_350 Hb_006541_030--Hb_005539_350 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_006541_030--Hb_002874_190 Hb_000207_250 Hb_000207_250 Hb_004976_030--Hb_000207_250 Hb_000200_050 Hb_000200_050 Hb_004976_030--Hb_000200_050 Hb_154648_010 Hb_154648_010 Hb_004976_030--Hb_154648_010 Hb_000000_250 Hb_000000_250 Hb_004976_030--Hb_000000_250 Hb_003996_020 Hb_003996_020 Hb_004976_030--Hb_003996_020 Hb_001671_020 Hb_001671_020 Hb_000567_260--Hb_001671_020 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_189003_080 Hb_189003_080 Hb_000567_260--Hb_189003_080 Hb_000567_260--Hb_001248_130 Hb_055062_030 Hb_055062_030 Hb_000567_260--Hb_055062_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8683 8.34977 5.67366 13.8368 25.2527 37.4721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.1239 31.9857 41.0888 13.3167 15.3169

CAGE analysis