Hb_183086_060

Information

Type desease resistance
Description Gene Name: AAA
Location Contig183086: 40172-49237
Sequence    

Annotation

kegg
ID tcc:TCM_015477
description P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1
nr
ID XP_012081080.1
description PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
swissprot
ID B4F6J6
description ATPase family AAA domain-containing protein 1 OS=Xenopus tropicalis GN=atad1 PE=2 SV=2
trembl
ID A0A067K278
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18153 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atpase family aaa domain-containing protein 1-b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17872: 40240-49160 , PASA_asmbl_17873: 48067-48180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183086_060 0.0 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
2 Hb_004109_190 0.0573823806 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
3 Hb_004724_420 0.0692068469 - - fucose synthetase, putative [Ricinus communis]
4 Hb_000029_020 0.0736492135 - - Vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_002687_110 0.0738449004 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
6 Hb_001248_130 0.0752733009 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
7 Hb_000205_270 0.0782712849 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
8 Hb_000567_260 0.0785948489 - - BnaA09g41440D [Brassica napus]
9 Hb_000041_050 0.0801652803 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
10 Hb_071736_020 0.0862038694 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
11 Hb_004976_030 0.0862201349 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
12 Hb_001811_020 0.0870083728 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000700_110 0.0878704035 - - Vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_007380_070 0.0880780698 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_000840_210 0.0887896725 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
16 Hb_006693_030 0.089865245 - - PREDICTED: ribonuclease H2 subunit A [Jatropha curcas]
17 Hb_000207_250 0.0903992009 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
18 Hb_001671_020 0.09155047 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
19 Hb_189003_080 0.0915743752 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
20 Hb_008066_010 0.0917055176 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_183086_060 Hb_183086_060 Hb_004109_190 Hb_004109_190 Hb_183086_060--Hb_004109_190 Hb_004724_420 Hb_004724_420 Hb_183086_060--Hb_004724_420 Hb_000029_020 Hb_000029_020 Hb_183086_060--Hb_000029_020 Hb_002687_110 Hb_002687_110 Hb_183086_060--Hb_002687_110 Hb_001248_130 Hb_001248_130 Hb_183086_060--Hb_001248_130 Hb_000205_270 Hb_000205_270 Hb_183086_060--Hb_000205_270 Hb_004109_190--Hb_002687_110 Hb_004109_190--Hb_004724_420 Hb_006541_030 Hb_006541_030 Hb_004109_190--Hb_006541_030 Hb_004976_030 Hb_004976_030 Hb_004109_190--Hb_004976_030 Hb_000567_260 Hb_000567_260 Hb_004109_190--Hb_000567_260 Hb_000041_050 Hb_000041_050 Hb_004724_420--Hb_000041_050 Hb_000700_110 Hb_000700_110 Hb_004724_420--Hb_000700_110 Hb_000614_230 Hb_000614_230 Hb_004724_420--Hb_000614_230 Hb_005289_030 Hb_005289_030 Hb_004724_420--Hb_005289_030 Hb_001811_020 Hb_001811_020 Hb_000029_020--Hb_001811_020 Hb_000602_010 Hb_000602_010 Hb_000029_020--Hb_000602_010 Hb_000029_020--Hb_002687_110 Hb_000115_330 Hb_000115_330 Hb_000029_020--Hb_000115_330 Hb_000029_020--Hb_004109_190 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_004738_040 Hb_004738_040 Hb_002687_110--Hb_004738_040 Hb_000080_190 Hb_000080_190 Hb_002687_110--Hb_000080_190 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_000409_020 Hb_000409_020 Hb_002687_110--Hb_000409_020 Hb_003943_040 Hb_003943_040 Hb_002687_110--Hb_003943_040 Hb_020178_070 Hb_020178_070 Hb_001248_130--Hb_020178_070 Hb_001248_130--Hb_000567_260 Hb_189003_080 Hb_189003_080 Hb_001248_130--Hb_189003_080 Hb_007441_120 Hb_007441_120 Hb_001248_130--Hb_007441_120 Hb_000207_250 Hb_000207_250 Hb_001248_130--Hb_000207_250 Hb_002016_110 Hb_002016_110 Hb_001248_130--Hb_002016_110 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.8179 19.3477 17.9496 39.651 63.47 100.48
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
99.7056 76.1943 115.836 32.4327 24.2417

CAGE analysis