Hb_005289_030

Information

Type -
Description -
Location Contig5289: 25890-35458
Sequence    

Annotation

kegg
ID cic:CICLE_v10001161mg
description hypothetical protein
nr
ID XP_012075161.1
description PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
swissprot
ID Q8VZ14
description Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana GN=RMR2 PE=2 SV=1
trembl
ID A0A067KSU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10986 PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47211: 25985-35430 , PASA_asmbl_47212: 29143-29662 , PASA_asmbl_47214: 28705-28935 , PASA_asmbl_47215: 30770-30970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005289_030 0.0 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
2 Hb_006117_070 0.0549182707 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
3 Hb_000230_510 0.0622458249 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
4 Hb_004254_120 0.0658669754 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000058_060 0.0670985813 - - PREDICTED: protein-tyrosine-phosphatase IBR5 [Jatropha curcas]
6 Hb_010504_020 0.0671627229 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
7 Hb_002759_060 0.069307014 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
8 Hb_005305_080 0.0709575122 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
9 Hb_004218_110 0.0758124503 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
10 Hb_003996_020 0.0763123175 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000510_320 0.0787527998 - - PREDICTED: uncharacterized protein LOC105649907 [Jatropha curcas]
12 Hb_006541_030 0.0789129267 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
13 Hb_000723_080 0.0805857196 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
14 Hb_000876_070 0.0806681345 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
15 Hb_001140_060 0.0816278284 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
16 Hb_159809_020 0.082564729 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000928_210 0.083178009 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
18 Hb_004635_100 0.0837158549 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
19 Hb_005618_170 0.0838295208 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
20 Hb_002963_010 0.08416861 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005289_030 Hb_005289_030 Hb_006117_070 Hb_006117_070 Hb_005289_030--Hb_006117_070 Hb_000230_510 Hb_000230_510 Hb_005289_030--Hb_000230_510 Hb_004254_120 Hb_004254_120 Hb_005289_030--Hb_004254_120 Hb_000058_060 Hb_000058_060 Hb_005289_030--Hb_000058_060 Hb_010504_020 Hb_010504_020 Hb_005289_030--Hb_010504_020 Hb_002759_060 Hb_002759_060 Hb_005289_030--Hb_002759_060 Hb_001140_060 Hb_001140_060 Hb_006117_070--Hb_001140_060 Hb_006117_070--Hb_000230_510 Hb_006541_030 Hb_006541_030 Hb_006117_070--Hb_006541_030 Hb_012753_160 Hb_012753_160 Hb_006117_070--Hb_012753_160 Hb_101705_030 Hb_101705_030 Hb_006117_070--Hb_101705_030 Hb_001083_020 Hb_001083_020 Hb_000230_510--Hb_001083_020 Hb_000384_100 Hb_000384_100 Hb_000230_510--Hb_000384_100 Hb_012675_060 Hb_012675_060 Hb_000230_510--Hb_012675_060 Hb_000230_510--Hb_012753_160 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_000876_070 Hb_000876_070 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_000009_460 Hb_000009_460 Hb_000058_060--Hb_000009_460 Hb_007416_320 Hb_007416_320 Hb_000058_060--Hb_007416_320 Hb_159809_020 Hb_159809_020 Hb_000058_060--Hb_159809_020 Hb_000058_060--Hb_002759_060 Hb_027073_040 Hb_027073_040 Hb_000058_060--Hb_027073_040 Hb_010504_020--Hb_005305_080 Hb_000510_130 Hb_000510_130 Hb_010504_020--Hb_000510_130 Hb_020956_020 Hb_020956_020 Hb_010504_020--Hb_020956_020 Hb_002477_330 Hb_002477_330 Hb_010504_020--Hb_002477_330 Hb_010504_020--Hb_159809_020 Hb_000959_260 Hb_000959_260 Hb_010504_020--Hb_000959_260 Hb_004218_110 Hb_004218_110 Hb_002759_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_002759_060--Hb_001833_110 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3305 15.6575 8.90375 20.0624 20.4698 33.8061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.8766 48.9502 44.9544 17.7406 16.4123

CAGE analysis