Hb_001123_230

Information

Type -
Description -
Location Contig1123: 165347-175066
Sequence    

Annotation

kegg
ID rcu:RCOM_1437810
description hypothetical protein
nr
ID XP_012088742.1
description PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
swissprot
ID Q5UNY4
description Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L728 PE=4 SV=1
trembl
ID A0A067JHF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23115 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03754: 173183-173610 , PASA_asmbl_03755: 173816-174446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_230 0.0 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
2 Hb_005147_090 0.077646664 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
3 Hb_018790_060 0.0891795662 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
4 Hb_163145_020 0.0899589203 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
5 Hb_000997_400 0.0945781271 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
6 Hb_000297_200 0.0959787449 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
7 Hb_000061_420 0.0988200226 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
8 Hb_003687_240 0.1038998787 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
9 Hb_000001_140 0.1041764343 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
10 Hb_000457_150 0.1044651787 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_002006_090 0.1049082707 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50990 [Jatropha curcas]
12 Hb_000696_040 0.106756246 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_003680_200 0.1086992046 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
14 Hb_000200_050 0.110839767 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000059_220 0.1109405369 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
16 Hb_000482_010 0.1114437882 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
17 Hb_000926_330 0.1114654536 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
18 Hb_000007_150 0.1132562412 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
19 Hb_000307_030 0.1135328048 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
20 Hb_006816_140 0.1138013004 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_230 Hb_001123_230 Hb_005147_090 Hb_005147_090 Hb_001123_230--Hb_005147_090 Hb_018790_060 Hb_018790_060 Hb_001123_230--Hb_018790_060 Hb_163145_020 Hb_163145_020 Hb_001123_230--Hb_163145_020 Hb_000997_400 Hb_000997_400 Hb_001123_230--Hb_000997_400 Hb_000297_200 Hb_000297_200 Hb_001123_230--Hb_000297_200 Hb_000061_420 Hb_000061_420 Hb_001123_230--Hb_000061_420 Hb_000457_150 Hb_000457_150 Hb_005147_090--Hb_000457_150 Hb_005147_090--Hb_018790_060 Hb_005147_090--Hb_000297_200 Hb_003750_080 Hb_003750_080 Hb_005147_090--Hb_003750_080 Hb_000200_340 Hb_000200_340 Hb_005147_090--Hb_000200_340 Hb_018790_060--Hb_000061_420 Hb_022216_020 Hb_022216_020 Hb_018790_060--Hb_022216_020 Hb_000009_160 Hb_000009_160 Hb_018790_060--Hb_000009_160 Hb_000224_170 Hb_000224_170 Hb_018790_060--Hb_000224_170 Hb_001329_300 Hb_001329_300 Hb_163145_020--Hb_001329_300 Hb_000567_260 Hb_000567_260 Hb_163145_020--Hb_000567_260 Hb_000635_220 Hb_000635_220 Hb_163145_020--Hb_000635_220 Hb_002006_090 Hb_002006_090 Hb_163145_020--Hb_002006_090 Hb_163145_020--Hb_000457_150 Hb_000614_230 Hb_000614_230 Hb_163145_020--Hb_000614_230 Hb_000997_400--Hb_000297_200 Hb_000059_220 Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_003018_190 Hb_003018_190 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000007_150 Hb_000007_150 Hb_000297_200--Hb_000007_150 Hb_000297_200--Hb_000059_220 Hb_003680_200 Hb_003680_200 Hb_000061_420--Hb_003680_200 Hb_000061_420--Hb_000224_170 Hb_000291_110 Hb_000291_110 Hb_000061_420--Hb_000291_110 Hb_000926_330 Hb_000926_330 Hb_000061_420--Hb_000926_330 Hb_181235_010 Hb_181235_010 Hb_000061_420--Hb_181235_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.22344 4.93996 0.788588 3.49856 6.23191 5.27284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.27627 6.72012 12.8011 3.27361 1.22155

CAGE analysis