Hb_172632_090

Information

Type -
Description -
Location Contig172632: 58150-61330
Sequence    

Annotation

kegg
ID rcu:RCOM_0686660
description ribosomal pseudouridine synthase, putative
nr
ID XP_002526838.1
description ribosomal pseudouridine synthase, putative [Ricinus communis]
swissprot
ID Q5XET6
description RNA pseudouridine synthase 3, mitochondrial OS=Arabidopsis thaliana GN=At1g78910 PE=2 SV=1
trembl
ID B9SLG9
description Ribosomal pseudouridine synthase, putative OS=Ricinus communis GN=RCOM_0686660 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna pseudouridine synthase mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16359: 58793-59385 , PASA_asmbl_16360: 60496-61746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172632_090 0.0 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
2 Hb_003126_080 0.0653909621 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
3 Hb_003615_010 0.0672168291 - - 60S ribosomal protein L8, putative [Ricinus communis]
4 Hb_005993_040 0.0680280504 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
5 Hb_000251_130 0.0716674515 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
6 Hb_001226_160 0.0725011636 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
7 Hb_002311_350 0.0775614317 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
8 Hb_000205_160 0.0791170975 - - Peroxisome biogenesis protein 12 [Morus notabilis]
9 Hb_004223_280 0.080286629 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
10 Hb_004800_070 0.0808933627 - - -
11 Hb_003976_010 0.0835679431 - - methionine aminopeptidase, putative [Ricinus communis]
12 Hb_000926_250 0.0835995565 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
13 Hb_006400_030 0.0851507042 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
14 Hb_000613_140 0.08566255 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
15 Hb_002081_130 0.0876335046 - - serine carboxypeptidase, putative [Ricinus communis]
16 Hb_033834_040 0.0877702899 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000085_050 0.0887220452 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_002043_190 0.0887748096 - - rwd domain-containing protein, putative [Ricinus communis]
19 Hb_002183_090 0.0888851549 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
20 Hb_002226_070 0.0890769387 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_172632_090 Hb_172632_090 Hb_003126_080 Hb_003126_080 Hb_172632_090--Hb_003126_080 Hb_003615_010 Hb_003615_010 Hb_172632_090--Hb_003615_010 Hb_005993_040 Hb_005993_040 Hb_172632_090--Hb_005993_040 Hb_000251_130 Hb_000251_130 Hb_172632_090--Hb_000251_130 Hb_001226_160 Hb_001226_160 Hb_172632_090--Hb_001226_160 Hb_002311_350 Hb_002311_350 Hb_172632_090--Hb_002311_350 Hb_000656_400 Hb_000656_400 Hb_003126_080--Hb_000656_400 Hb_003126_080--Hb_005993_040 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_004491_010 Hb_004491_010 Hb_003126_080--Hb_004491_010 Hb_004223_280 Hb_004223_280 Hb_003126_080--Hb_004223_280 Hb_001048_020 Hb_001048_020 Hb_003615_010--Hb_001048_020 Hb_061090_010 Hb_061090_010 Hb_003615_010--Hb_061090_010 Hb_003615_010--Hb_001226_160 Hb_000613_140 Hb_000613_140 Hb_003615_010--Hb_000613_140 Hb_000926_250 Hb_000926_250 Hb_003615_010--Hb_000926_250 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_000251_130--Hb_001226_160 Hb_000251_130--Hb_000656_400 Hb_002183_090 Hb_002183_090 Hb_000251_130--Hb_002183_090 Hb_005357_030 Hb_005357_030 Hb_000251_130--Hb_005357_030 Hb_019253_020 Hb_019253_020 Hb_000251_130--Hb_019253_020 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_096563_010 Hb_096563_010 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_000380_190 Hb_000380_190 Hb_002311_350--Hb_000380_190 Hb_001477_110 Hb_001477_110 Hb_002311_350--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_001824_070 Hb_001824_070 Hb_002311_350--Hb_001824_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.55174 2.26766 1.81838 1.35793 4.38688 4.74308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.36276 6.90895 4.31429 3.92099 1.15518

CAGE analysis