Hb_005618_140

Information

Type -
Description -
Location Contig5618: 121934-123325
Sequence    

Annotation

kegg
ID rcu:RCOM_1343300
description ribonuclease P, putative
nr
ID XP_012083012.1
description PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
swissprot
ID A2BK92
description 50S ribosomal protein L7Ae OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl7ae PE=3 SV=1
trembl
ID A0A067K953
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14115 PE=4 SV=1
Gene Ontology
ID GO:0005622
description ribosomal protein l7ae l30e s12e gadd45 family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48837: 121970-123336 , PASA_asmbl_48838: 121926-123288 , PASA_asmbl_48839: 121997-123288
cDNA
(Sanger)
(ID:Location)		 002_P11.ab1: 121926-123193 , 010_J02.ab1: 121970-123131 , 035_A14.ab1: 121970-123052 , 037_G23.ab1: 121970-123088 , 048_P05.ab1: 121970-123112

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005618_140 0.0 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
2 Hb_002311_350 0.074958232 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
3 Hb_000487_250 0.0759710645 - - 60S ribosomal protein L27e, putative [Ricinus communis]
4 Hb_002701_240 0.0771714328 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
5 Hb_001477_110 0.0788809182 - - prohibitin, putative [Ricinus communis]
6 Hb_000380_190 0.0801214351 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
7 Hb_089839_020 0.0820743326 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
8 Hb_000227_230 0.0821815067 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
9 Hb_004375_100 0.0825452454 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
10 Hb_000580_080 0.0836376474 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
11 Hb_000251_130 0.0849170375 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
12 Hb_007101_130 0.0894017371 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000970_010 0.0899826968 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
14 Hb_001540_010 0.0919558324 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
15 Hb_003734_140 0.0921535435 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001824_070 0.0924580124 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
17 Hb_001235_210 0.0936668824 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
18 Hb_023732_070 0.0945724905 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
19 Hb_002375_090 0.096358856 - - -
20 Hb_001818_020 0.0964542764 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]

Gene co-expression network

sample Hb_005618_140 Hb_005618_140 Hb_002311_350 Hb_002311_350 Hb_005618_140--Hb_002311_350 Hb_000487_250 Hb_000487_250 Hb_005618_140--Hb_000487_250 Hb_002701_240 Hb_002701_240 Hb_005618_140--Hb_002701_240 Hb_001477_110 Hb_001477_110 Hb_005618_140--Hb_001477_110 Hb_000380_190 Hb_000380_190 Hb_005618_140--Hb_000380_190 Hb_089839_020 Hb_089839_020 Hb_005618_140--Hb_089839_020 Hb_002311_350--Hb_000380_190 Hb_002311_350--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_001824_070 Hb_001824_070 Hb_002311_350--Hb_001824_070 Hb_001818_020 Hb_001818_020 Hb_000487_250--Hb_001818_020 Hb_000012_220 Hb_000012_220 Hb_000487_250--Hb_000012_220 Hb_000970_010 Hb_000970_010 Hb_000487_250--Hb_000970_010 Hb_000025_530 Hb_000025_530 Hb_000487_250--Hb_000025_530 Hb_007617_020 Hb_007617_020 Hb_000487_250--Hb_007617_020 Hb_004375_100 Hb_004375_100 Hb_002701_240--Hb_004375_100 Hb_156947_010 Hb_156947_010 Hb_002701_240--Hb_156947_010 Hb_011150_010 Hb_011150_010 Hb_002701_240--Hb_011150_010 Hb_027073_040 Hb_027073_040 Hb_002701_240--Hb_027073_040 Hb_010068_020 Hb_010068_020 Hb_002701_240--Hb_010068_020 Hb_001477_110--Hb_001824_070 Hb_001477_110--Hb_000380_190 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_001477_110--Hb_000007_100 Hb_000380_190--Hb_000007_100 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070 Hb_003734_140 Hb_003734_140 Hb_089839_020--Hb_003734_140 Hb_002713_070 Hb_002713_070 Hb_089839_020--Hb_002713_070 Hb_089839_020--Hb_000227_230 Hb_000580_080 Hb_000580_080 Hb_089839_020--Hb_000580_080 Hb_002925_030 Hb_002925_030 Hb_089839_020--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_089839_020--Hb_000136_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9919 5.82029 3.58015 5.83339 12.8278 16.9221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1329 36.4615 15.0505 12.5623 4.80261

CAGE analysis