Hb_001235_210

Information

Type -
Description -
Location Contig1235: 242225-244925
Sequence    

Annotation

kegg
ID pop:POPTR_0017s05750g
description asparaginyl-tRNA synthetase family protein
nr
ID XP_012069983.1
description PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID O48593
description Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3
trembl
ID A0A067KY19
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03404 PE=3 SV=1
Gene Ontology
ID GO:0005737
description asparagine--trna chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07179: 243025-244962 , PASA_asmbl_07180: 243025-244921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_210 0.0 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_001477_110 0.0660783977 - - prohibitin, putative [Ricinus communis]
3 Hb_004645_050 0.0670117295 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
4 Hb_000580_080 0.0737088461 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
5 Hb_002311_350 0.0781186343 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
6 Hb_001824_070 0.0815074492 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
7 Hb_000380_190 0.082104221 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
8 Hb_007747_090 0.0849425121 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
9 Hb_000977_080 0.0863366593 - - type II inositol 5-phosphatase, putative [Ricinus communis]
10 Hb_000928_240 0.0867585317 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
11 Hb_000318_380 0.0907154509 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
12 Hb_000465_060 0.0918598126 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
13 Hb_000152_430 0.0919585801 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
14 Hb_000123_260 0.0933462573 - - PREDICTED: protein gar2 [Jatropha curcas]
15 Hb_000531_020 0.0933558306 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
16 Hb_005618_140 0.0936668824 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
17 Hb_003878_190 0.0942080857 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
18 Hb_003001_060 0.0942581837 - - wound-responsive family protein [Populus trichocarpa]
19 Hb_002097_110 0.0946415528 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_171900_050 0.0953146018 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001235_210 Hb_001235_210 Hb_001477_110 Hb_001477_110 Hb_001235_210--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_001235_210--Hb_004645_050 Hb_000580_080 Hb_000580_080 Hb_001235_210--Hb_000580_080 Hb_002311_350 Hb_002311_350 Hb_001235_210--Hb_002311_350 Hb_001824_070 Hb_001824_070 Hb_001235_210--Hb_001824_070 Hb_000380_190 Hb_000380_190 Hb_001235_210--Hb_000380_190 Hb_001477_110--Hb_001824_070 Hb_001477_110--Hb_000380_190 Hb_001477_110--Hb_002311_350 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_000007_100 Hb_000007_100 Hb_001477_110--Hb_000007_100 Hb_000977_080 Hb_000977_080 Hb_004645_050--Hb_000977_080 Hb_000189_270 Hb_000189_270 Hb_004645_050--Hb_000189_270 Hb_004645_050--Hb_002311_350 Hb_000531_020 Hb_000531_020 Hb_004645_050--Hb_000531_020 Hb_002307_030 Hb_002307_030 Hb_004645_050--Hb_002307_030 Hb_000465_060 Hb_000465_060 Hb_000580_080--Hb_000465_060 Hb_089839_020 Hb_089839_020 Hb_000580_080--Hb_089839_020 Hb_000580_080--Hb_001824_070 Hb_001584_070 Hb_001584_070 Hb_000580_080--Hb_001584_070 Hb_000580_080--Hb_001477_110 Hb_002311_350--Hb_000380_190 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_002311_350--Hb_001824_070 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000371_080 Hb_000371_080 Hb_001824_070--Hb_000371_080 Hb_001824_070--Hb_000465_060 Hb_000380_190--Hb_000007_100 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.19942 2.8937 2.04404 2.25649 10.3168 12.9978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.95437 19.8732 7.26935 4.89146 2.90654

CAGE analysis