Hb_005194_010

Information

Type -
Description -
Location Contig5194: 45523-47562
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09950g
description hypothetical protein
nr
ID XP_012079387.1
description PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
swissprot
ID O64816
description Casein kinase II subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g23070 PE=2 SV=1
trembl
ID A0A067KIG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12521 PE=4 SV=1
Gene Ontology
ID GO:0004672
description casein kinase ii subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005194_010 0.0 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
2 Hb_008648_010 0.0721619016 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
3 Hb_000521_050 0.0727255946 - - PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Jatropha curcas]
4 Hb_001828_060 0.086710865 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
5 Hb_002477_070 0.087249999 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
6 Hb_001828_190 0.0875916317 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
7 Hb_002226_070 0.09013135 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
8 Hb_000059_370 0.0905538713 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
9 Hb_003963_010 0.0934191114 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000120_790 0.0936214755 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
11 Hb_000085_050 0.0938319278 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_001975_140 0.0966452864 - - PREDICTED: urease accessory protein F [Jatropha curcas]
13 Hb_006031_020 0.0976240264 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
14 Hb_132835_010 0.0986028963 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
15 Hb_002006_020 0.0988759345 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
16 Hb_000107_330 0.0990595914 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
17 Hb_002609_020 0.0993398865 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
18 Hb_003780_030 0.1006607742 - - PREDICTED: protein CMSS1 [Jatropha curcas]
19 Hb_000342_130 0.1036751919 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
20 Hb_001190_070 0.1038717207 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]

Gene co-expression network

sample Hb_005194_010 Hb_005194_010 Hb_008648_010 Hb_008648_010 Hb_005194_010--Hb_008648_010 Hb_000521_050 Hb_000521_050 Hb_005194_010--Hb_000521_050 Hb_001828_060 Hb_001828_060 Hb_005194_010--Hb_001828_060 Hb_002477_070 Hb_002477_070 Hb_005194_010--Hb_002477_070 Hb_001828_190 Hb_001828_190 Hb_005194_010--Hb_001828_190 Hb_002226_070 Hb_002226_070 Hb_005194_010--Hb_002226_070 Hb_008648_010--Hb_002477_070 Hb_000059_370 Hb_000059_370 Hb_008648_010--Hb_000059_370 Hb_012725_050 Hb_012725_050 Hb_008648_010--Hb_012725_050 Hb_001105_030 Hb_001105_030 Hb_008648_010--Hb_001105_030 Hb_032258_030 Hb_032258_030 Hb_008648_010--Hb_032258_030 Hb_000023_220 Hb_000023_220 Hb_000521_050--Hb_000023_220 Hb_000291_220 Hb_000291_220 Hb_000521_050--Hb_000291_220 Hb_000300_160 Hb_000300_160 Hb_000521_050--Hb_000300_160 Hb_000085_050 Hb_000085_050 Hb_000521_050--Hb_000085_050 Hb_000521_050--Hb_001828_190 Hb_002534_150 Hb_002534_150 Hb_001828_060--Hb_002534_150 Hb_005725_250 Hb_005725_250 Hb_001828_060--Hb_005725_250 Hb_001828_060--Hb_000059_370 Hb_027380_050 Hb_027380_050 Hb_001828_060--Hb_027380_050 Hb_003780_030 Hb_003780_030 Hb_001828_060--Hb_003780_030 Hb_012490_070 Hb_012490_070 Hb_001828_060--Hb_012490_070 Hb_002214_040 Hb_002214_040 Hb_002477_070--Hb_002214_040 Hb_009838_080 Hb_009838_080 Hb_002477_070--Hb_009838_080 Hb_002006_020 Hb_002006_020 Hb_002477_070--Hb_002006_020 Hb_000529_190 Hb_000529_190 Hb_002477_070--Hb_000529_190 Hb_002477_070--Hb_000059_370 Hb_001090_040 Hb_001090_040 Hb_001828_190--Hb_001090_040 Hb_007017_030 Hb_007017_030 Hb_001828_190--Hb_007017_030 Hb_003525_010 Hb_003525_010 Hb_001828_190--Hb_003525_010 Hb_001828_190--Hb_002226_070 Hb_007691_030 Hb_007691_030 Hb_001828_190--Hb_007691_030 Hb_000092_170 Hb_000092_170 Hb_001828_190--Hb_000092_170 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_002226_070--Hb_000059_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.823 13.1887 13.9239 17.2002 47.4919 30.265
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.0702 52.9584 31.487 28.2896 22.8977

CAGE analysis