Hb_000300_160

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig300: 136246-139704
Sequence    

Annotation

kegg
ID rcu:RCOM_1320870
description hypothetical protein
nr
ID XP_012070363.1
description PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
swissprot
ID Q93ZL5
description Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2
trembl
ID A0A067KTT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02656 PE=4 SV=1
Gene Ontology
ID GO:0003677
description cyclic dof factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_160 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
2 Hb_000521_050 0.0897619443 - - PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Jatropha curcas]
3 Hb_001635_180 0.0949481121 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
4 Hb_003417_020 0.1045060692 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
5 Hb_001633_050 0.1050278804 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
6 Hb_003126_050 0.1069140881 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
7 Hb_000777_040 0.1074361448 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
8 Hb_005194_010 0.1079479918 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
9 Hb_002226_070 0.1117989289 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
10 Hb_000085_050 0.1123897646 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_001489_060 0.1140478957 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
12 Hb_000019_210 0.1157278121 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
13 Hb_003780_030 0.1158590067 - - PREDICTED: protein CMSS1 [Jatropha curcas]
14 Hb_002200_080 0.1176655199 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
15 Hb_002346_020 0.1187217014 - - -
16 Hb_001828_190 0.1189110372 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
17 Hb_001811_050 0.1189166248 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
18 Hb_006031_020 0.1190017653 - - PREDICTED: protein FLX-like 1 isoform X1 [Jatropha curcas]
19 Hb_000107_330 0.1192150744 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Jatropha curcas]
20 Hb_001632_040 0.1192491917 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000300_160 Hb_000300_160 Hb_000521_050 Hb_000521_050 Hb_000300_160--Hb_000521_050 Hb_001635_180 Hb_001635_180 Hb_000300_160--Hb_001635_180 Hb_003417_020 Hb_003417_020 Hb_000300_160--Hb_003417_020 Hb_001633_050 Hb_001633_050 Hb_000300_160--Hb_001633_050 Hb_003126_050 Hb_003126_050 Hb_000300_160--Hb_003126_050 Hb_000777_040 Hb_000777_040 Hb_000300_160--Hb_000777_040 Hb_005194_010 Hb_005194_010 Hb_000521_050--Hb_005194_010 Hb_000023_220 Hb_000023_220 Hb_000521_050--Hb_000023_220 Hb_000291_220 Hb_000291_220 Hb_000521_050--Hb_000291_220 Hb_000085_050 Hb_000085_050 Hb_000521_050--Hb_000085_050 Hb_001828_190 Hb_001828_190 Hb_000521_050--Hb_001828_190 Hb_120410_010 Hb_120410_010 Hb_001635_180--Hb_120410_010 Hb_002346_020 Hb_002346_020 Hb_001635_180--Hb_002346_020 Hb_005697_060 Hb_005697_060 Hb_001635_180--Hb_005697_060 Hb_002530_030 Hb_002530_030 Hb_001635_180--Hb_002530_030 Hb_003428_030 Hb_003428_030 Hb_001635_180--Hb_003428_030 Hb_001635_180--Hb_003417_020 Hb_003417_020--Hb_003126_050 Hb_001305_010 Hb_001305_010 Hb_003417_020--Hb_001305_010 Hb_007691_030 Hb_007691_030 Hb_003417_020--Hb_007691_030 Hb_003175_010 Hb_003175_010 Hb_003417_020--Hb_003175_010 Hb_019280_040 Hb_019280_040 Hb_003417_020--Hb_019280_040 Hb_007951_060 Hb_007951_060 Hb_003417_020--Hb_007951_060 Hb_004116_190 Hb_004116_190 Hb_001633_050--Hb_004116_190 Hb_001633_050--Hb_000777_040 Hb_002995_020 Hb_002995_020 Hb_001633_050--Hb_002995_020 Hb_000504_140 Hb_000504_140 Hb_001633_050--Hb_000504_140 Hb_000656_240 Hb_000656_240 Hb_001633_050--Hb_000656_240 Hb_001512_030 Hb_001512_030 Hb_001633_050--Hb_001512_030 Hb_000640_240 Hb_000640_240 Hb_003126_050--Hb_000640_240 Hb_003092_040 Hb_003092_040 Hb_003126_050--Hb_003092_040 Hb_000041_270 Hb_000041_270 Hb_003126_050--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_003126_050--Hb_096563_010 Hb_003126_050--Hb_007691_030 Hb_001009_270 Hb_001009_270 Hb_000777_040--Hb_001009_270 Hb_000985_030 Hb_000985_030 Hb_000777_040--Hb_000985_030 Hb_005779_060 Hb_005779_060 Hb_000777_040--Hb_005779_060 Hb_000206_210 Hb_000206_210 Hb_000777_040--Hb_000206_210 Hb_058999_020 Hb_058999_020 Hb_000777_040--Hb_058999_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.33072 2.7652 4.37335 6.64128 11.0622 5.86618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.81916 13.7875 8.91774 8.24901 3.90343

CAGE analysis