Hb_001828_060

Information

Type desease resistance
Description Gene Name: AAA_31
Location Contig1828: 59824-62703
Sequence    

Annotation

kegg
ID rcu:RCOM_1679530
description nucleotide-binding protein, putative
nr
ID XP_002509573.1
description nucleotide-binding protein, putative [Ricinus communis]
swissprot
ID Q8H1Q2
description Cytosolic Fe-S cluster assembly factor NBP35 OS=Arabidopsis thaliana GN=NBP35 PE=1 SV=1
trembl
ID B9RBN9
description Cytosolic Fe-S cluster assembly factor NBP35 OS=Ricinus communis GN=NBP35 PE=3 SV=1
Gene Ontology
ID GO:0005829
description cytosolic fe-s cluster assembly factor nbp35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17805: 59962-62775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001828_060 0.0 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
2 Hb_002534_150 0.0546586724 - - catalytic, putative [Ricinus communis]
3 Hb_005725_250 0.0604725456 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
4 Hb_000059_370 0.0661293671 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
5 Hb_027380_050 0.0758842021 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
6 Hb_003780_030 0.0801115736 - - PREDICTED: protein CMSS1 [Jatropha curcas]
7 Hb_012490_070 0.082548102 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001766_110 0.0826619008 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
9 Hb_002056_050 0.0829445118 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
10 Hb_008648_010 0.0833262719 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
11 Hb_000680_160 0.0835460153 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
12 Hb_004116_190 0.0842798157 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
13 Hb_000676_180 0.0845835146 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
14 Hb_000479_090 0.0847154687 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
15 Hb_000107_160 0.0864025026 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
16 Hb_005194_010 0.086710865 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
17 Hb_001633_050 0.0871848417 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
18 Hb_000384_100 0.0875851088 - - hydrolase, putative [Ricinus communis]
19 Hb_000656_240 0.0878034316 - - proteasome subunit alpha type, putative [Ricinus communis]
20 Hb_058999_020 0.0878705127 - - PREDICTED: mitochondrial outer membrane import complex protein METAXIN [Jatropha curcas]

Gene co-expression network

sample Hb_001828_060 Hb_001828_060 Hb_002534_150 Hb_002534_150 Hb_001828_060--Hb_002534_150 Hb_005725_250 Hb_005725_250 Hb_001828_060--Hb_005725_250 Hb_000059_370 Hb_000059_370 Hb_001828_060--Hb_000059_370 Hb_027380_050 Hb_027380_050 Hb_001828_060--Hb_027380_050 Hb_003780_030 Hb_003780_030 Hb_001828_060--Hb_003780_030 Hb_012490_070 Hb_012490_070 Hb_001828_060--Hb_012490_070 Hb_002534_150--Hb_005725_250 Hb_001534_120 Hb_001534_120 Hb_002534_150--Hb_001534_120 Hb_002534_150--Hb_000059_370 Hb_005697_060 Hb_005697_060 Hb_002534_150--Hb_005697_060 Hb_004116_190 Hb_004116_190 Hb_002534_150--Hb_004116_190 Hb_000676_180 Hb_000676_180 Hb_005725_250--Hb_000676_180 Hb_002739_100 Hb_002739_100 Hb_005725_250--Hb_002739_100 Hb_012019_010 Hb_012019_010 Hb_005725_250--Hb_012019_010 Hb_005779_060 Hb_005779_060 Hb_005725_250--Hb_005779_060 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_001245_100 Hb_001245_100 Hb_027380_050--Hb_001245_100 Hb_058999_020 Hb_058999_020 Hb_027380_050--Hb_058999_020 Hb_027380_050--Hb_005779_060 Hb_000684_470 Hb_000684_470 Hb_027380_050--Hb_000684_470 Hb_000152_500 Hb_000152_500 Hb_027380_050--Hb_000152_500 Hb_001030_020 Hb_001030_020 Hb_027380_050--Hb_001030_020 Hb_007576_080 Hb_007576_080 Hb_003780_030--Hb_007576_080 Hb_038172_010 Hb_038172_010 Hb_003780_030--Hb_038172_010 Hb_003525_010 Hb_003525_010 Hb_003780_030--Hb_003525_010 Hb_000317_240 Hb_000317_240 Hb_003780_030--Hb_000317_240 Hb_001481_090 Hb_001481_090 Hb_003780_030--Hb_001481_090 Hb_014109_040 Hb_014109_040 Hb_003780_030--Hb_014109_040 Hb_001545_170 Hb_001545_170 Hb_012490_070--Hb_001545_170 Hb_000250_060 Hb_000250_060 Hb_012490_070--Hb_000250_060 Hb_005539_280 Hb_005539_280 Hb_012490_070--Hb_005539_280 Hb_000120_460 Hb_000120_460 Hb_012490_070--Hb_000120_460 Hb_002197_050 Hb_002197_050 Hb_012490_070--Hb_002197_050 Hb_000258_260 Hb_000258_260 Hb_012490_070--Hb_000258_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9141 19.9211 17.4683 16.3066 31.6311 22.0242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.858 54.9275 26.993 26.2821 20.5408

CAGE analysis