Hb_009658_020

Information

Type -
Description -
Location Contig9658: 24129-29322
Sequence    

Annotation

kegg
ID rcu:RCOM_1385570
description RNA binding protein, putative
nr
ID XP_012089643.1
description PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
swissprot
ID Q9AST1
description Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana GN=TAF15 PE=1 SV=1
trembl
ID A0A067JGB5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01663 PE=4 SV=1
Gene Ontology
ID GO:0000166
description transcription initiation factor tfiid subunit 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009658_020 0.0 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
2 Hb_032258_030 0.0822864116 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
3 Hb_002893_080 0.0984056166 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
4 Hb_000103_080 0.1010919438 - - PREDICTED: ATP-dependent RNA helicase SUV3, mitochondrial [Jatropha curcas]
5 Hb_155159_030 0.1011391631 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
6 Hb_001975_140 0.1018198481 - - PREDICTED: urease accessory protein F [Jatropha curcas]
7 Hb_001579_220 0.1022478054 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
8 Hb_008406_190 0.1027617847 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
9 Hb_000599_300 0.1029449837 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
10 Hb_000116_440 0.1077723338 - - PREDICTED: eukaryotic translation initiation factor 6-2 [Jatropha curcas]
11 Hb_000111_420 0.1080218094 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
12 Hb_012035_050 0.1081875614 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
13 Hb_007672_060 0.1089619869 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
14 Hb_000170_070 0.1097742219 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
15 Hb_005194_010 0.1115252442 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
16 Hb_008648_010 0.1128798133 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
17 Hb_105123_010 0.1129002376 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
18 Hb_000220_220 0.1130869379 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
19 Hb_000003_080 0.11483492 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
20 Hb_009558_030 0.1152642934 - - myb3r3, putative [Ricinus communis]

Gene co-expression network

sample Hb_009658_020 Hb_009658_020 Hb_032258_030 Hb_032258_030 Hb_009658_020--Hb_032258_030 Hb_002893_080 Hb_002893_080 Hb_009658_020--Hb_002893_080 Hb_000103_080 Hb_000103_080 Hb_009658_020--Hb_000103_080 Hb_155159_030 Hb_155159_030 Hb_009658_020--Hb_155159_030 Hb_001975_140 Hb_001975_140 Hb_009658_020--Hb_001975_140 Hb_001579_220 Hb_001579_220 Hb_009658_020--Hb_001579_220 Hb_032258_030--Hb_155159_030 Hb_008648_010 Hb_008648_010 Hb_032258_030--Hb_008648_010 Hb_105123_010 Hb_105123_010 Hb_032258_030--Hb_105123_010 Hb_004097_050 Hb_004097_050 Hb_032258_030--Hb_004097_050 Hb_005306_170 Hb_005306_170 Hb_032258_030--Hb_005306_170 Hb_007017_030 Hb_007017_030 Hb_002893_080--Hb_007017_030 Hb_008406_190 Hb_008406_190 Hb_002893_080--Hb_008406_190 Hb_000599_300 Hb_000599_300 Hb_002893_080--Hb_000599_300 Hb_003633_030 Hb_003633_030 Hb_002893_080--Hb_003633_030 Hb_000116_440 Hb_000116_440 Hb_002893_080--Hb_000116_440 Hb_002893_080--Hb_001579_220 Hb_000103_080--Hb_008406_190 Hb_003333_060 Hb_003333_060 Hb_000103_080--Hb_003333_060 Hb_033594_120 Hb_033594_120 Hb_000103_080--Hb_033594_120 Hb_000272_020 Hb_000272_020 Hb_000103_080--Hb_000272_020 Hb_010423_040 Hb_010423_040 Hb_000103_080--Hb_010423_040 Hb_000960_060 Hb_000960_060 Hb_000103_080--Hb_000960_060 Hb_127552_030 Hb_127552_030 Hb_155159_030--Hb_127552_030 Hb_155159_030--Hb_105123_010 Hb_015934_070 Hb_015934_070 Hb_155159_030--Hb_015934_070 Hb_025240_040 Hb_025240_040 Hb_155159_030--Hb_025240_040 Hb_155159_030--Hb_001579_220 Hb_005489_110 Hb_005489_110 Hb_001975_140--Hb_005489_110 Hb_132835_010 Hb_132835_010 Hb_001975_140--Hb_132835_010 Hb_000173_290 Hb_000173_290 Hb_001975_140--Hb_000173_290 Hb_005194_010 Hb_005194_010 Hb_001975_140--Hb_005194_010 Hb_000342_130 Hb_000342_130 Hb_001975_140--Hb_000342_130 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69465 4.73616 3.20786 7.12369 13.6968 11.6248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5528 14.6849 8.59748 7.88115 11.8926

CAGE analysis