Hb_001258_040

Information

Type -
Description -
Location Contig1258: 57379-59601
Sequence    

Annotation

kegg
ID tcc:TCM_000851
description Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1
nr
ID KDP32117.1
description hypothetical protein JCGZ_12578 [Jatropha curcas]
swissprot
ID Q9M2Y4
description Pentatricopeptide repeat-containing protein At3g49740 OS=Arabidopsis thaliana GN=PCMP-E84 PE=2 SV=1
trembl
ID A0A067K7L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12578 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at3g49740

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_040 0.0 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
2 Hb_022693_060 0.069170552 - - -
3 Hb_000635_250 0.0805331673 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
4 Hb_001545_120 0.0820088601 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
5 Hb_000000_250 0.0838730648 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
6 Hb_000022_250 0.0847478353 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
7 Hb_007426_030 0.0853197764 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
8 Hb_004109_190 0.0903502302 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
9 Hb_011242_040 0.0903949607 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_011673_030 0.0915184946 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
11 Hb_000959_260 0.0934622791 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
12 Hb_000808_230 0.0936428506 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
13 Hb_007951_050 0.0949139212 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_003786_020 0.0959616601 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
15 Hb_002205_070 0.096904432 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
16 Hb_002636_160 0.0973017453 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630 [Jatropha curcas]
17 Hb_001675_180 0.0986262807 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
18 Hb_000243_030 0.0993612168 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
19 Hb_000538_200 0.1010340077 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
20 Hb_154648_010 0.101580736 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001258_040 Hb_001258_040 Hb_022693_060 Hb_022693_060 Hb_001258_040--Hb_022693_060 Hb_000635_250 Hb_000635_250 Hb_001258_040--Hb_000635_250 Hb_001545_120 Hb_001545_120 Hb_001258_040--Hb_001545_120 Hb_000000_250 Hb_000000_250 Hb_001258_040--Hb_000000_250 Hb_000022_250 Hb_000022_250 Hb_001258_040--Hb_000022_250 Hb_007426_030 Hb_007426_030 Hb_001258_040--Hb_007426_030 Hb_105123_010 Hb_105123_010 Hb_022693_060--Hb_105123_010 Hb_002205_070 Hb_002205_070 Hb_022693_060--Hb_002205_070 Hb_000959_260 Hb_000959_260 Hb_022693_060--Hb_000959_260 Hb_022693_060--Hb_000635_250 Hb_000373_280 Hb_000373_280 Hb_022693_060--Hb_000373_280 Hb_000635_250--Hb_001545_120 Hb_002044_080 Hb_002044_080 Hb_000635_250--Hb_002044_080 Hb_044728_010 Hb_044728_010 Hb_000635_250--Hb_044728_010 Hb_002725_120 Hb_002725_120 Hb_000635_250--Hb_002725_120 Hb_009767_110 Hb_009767_110 Hb_000635_250--Hb_009767_110 Hb_001545_120--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_001545_120--Hb_000808_230 Hb_011673_030 Hb_011673_030 Hb_001545_120--Hb_011673_030 Hb_006502_090 Hb_006502_090 Hb_001545_120--Hb_006502_090 Hb_001776_140 Hb_001776_140 Hb_001545_120--Hb_001776_140 Hb_004600_040 Hb_004600_040 Hb_001545_120--Hb_004600_040 Hb_154648_010 Hb_154648_010 Hb_000000_250--Hb_154648_010 Hb_000086_400 Hb_000086_400 Hb_000000_250--Hb_000086_400 Hb_006922_110 Hb_006922_110 Hb_000000_250--Hb_006922_110 Hb_001898_220 Hb_001898_220 Hb_000000_250--Hb_001898_220 Hb_189003_080 Hb_189003_080 Hb_000000_250--Hb_189003_080 Hb_003996_020 Hb_003996_020 Hb_000000_250--Hb_003996_020 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_007951_050 Hb_007951_050 Hb_000022_250--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000022_250--Hb_000554_020 Hb_001159_100 Hb_001159_100 Hb_000022_250--Hb_001159_100 Hb_010172_050 Hb_010172_050 Hb_000022_250--Hb_010172_050 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330 Hb_000103_180 Hb_000103_180 Hb_007426_030--Hb_000103_180 Hb_001019_060 Hb_001019_060 Hb_007426_030--Hb_001019_060 Hb_007426_030--Hb_000808_230 Hb_000483_200 Hb_000483_200 Hb_007426_030--Hb_000483_200 Hb_002079_010 Hb_002079_010 Hb_007426_030--Hb_002079_010 Hb_006400_060 Hb_006400_060 Hb_007426_030--Hb_006400_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.94114 2.52313 1.02606 1.79422 3.76173 7.35386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.41852 6.0369 6.06982 2.41832 3.68458

CAGE analysis