Hb_004600_040

Information

Type -
Description -
Location Contig4600: 33212-40012
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43684: 33226-39977 , PASA_asmbl_43685: 33507-37028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004600_040 0.0 - - -
2 Hb_002876_110 0.0617116553 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000538_200 0.0637707694 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
4 Hb_000123_260 0.0642285694 - - PREDICTED: protein gar2 [Jatropha curcas]
5 Hb_000421_260 0.0667330862 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
6 Hb_003097_150 0.0667496952 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
7 Hb_000317_020 0.0683387581 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
8 Hb_000815_210 0.0705781926 - - uncoupling protein 3, partial [Manihot esculenta]
9 Hb_000152_820 0.0727798955 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
10 Hb_001736_040 0.0733823848 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
11 Hb_001720_050 0.0744973855 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
12 Hb_003777_330 0.07618268 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
13 Hb_001545_120 0.0771995105 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
14 Hb_005237_010 0.0775622035 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
15 Hb_000300_060 0.0785585702 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
16 Hb_011673_030 0.0785712994 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
17 Hb_006332_020 0.0786891152 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
18 Hb_004195_160 0.0800422796 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
19 Hb_007426_230 0.0805283648 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
20 Hb_002609_110 0.080863147 - - hypothetical protein JCGZ_08497 [Jatropha curcas]

Gene co-expression network

sample Hb_004600_040 Hb_004600_040 Hb_002876_110 Hb_002876_110 Hb_004600_040--Hb_002876_110 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_000421_260 Hb_000421_260 Hb_004600_040--Hb_000421_260 Hb_003097_150 Hb_003097_150 Hb_004600_040--Hb_003097_150 Hb_000317_020 Hb_000317_020 Hb_004600_040--Hb_000317_020 Hb_002876_110--Hb_000317_020 Hb_006332_020 Hb_006332_020 Hb_002876_110--Hb_006332_020 Hb_004724_200 Hb_004724_200 Hb_002876_110--Hb_004724_200 Hb_001736_040 Hb_001736_040 Hb_002876_110--Hb_001736_040 Hb_000392_300 Hb_000392_300 Hb_002876_110--Hb_000392_300 Hb_001157_060 Hb_001157_060 Hb_000538_200--Hb_001157_060 Hb_000815_210 Hb_000815_210 Hb_000538_200--Hb_000815_210 Hb_000538_200--Hb_001736_040 Hb_011673_030 Hb_011673_030 Hb_000538_200--Hb_011673_030 Hb_000538_200--Hb_000421_260 Hb_007426_230 Hb_007426_230 Hb_000123_260--Hb_007426_230 Hb_000189_620 Hb_000189_620 Hb_000123_260--Hb_000189_620 Hb_001545_120 Hb_001545_120 Hb_000123_260--Hb_001545_120 Hb_000123_260--Hb_003097_150 Hb_004195_160 Hb_004195_160 Hb_000123_260--Hb_004195_160 Hb_002890_340 Hb_002890_340 Hb_000421_260--Hb_002890_340 Hb_001720_050 Hb_001720_050 Hb_000421_260--Hb_001720_050 Hb_007951_050 Hb_007951_050 Hb_000421_260--Hb_007951_050 Hb_005062_070 Hb_005062_070 Hb_000421_260--Hb_005062_070 Hb_009111_050 Hb_009111_050 Hb_000421_260--Hb_009111_050 Hb_000300_060 Hb_000300_060 Hb_003097_150--Hb_000300_060 Hb_005237_010 Hb_005237_010 Hb_003097_150--Hb_005237_010 Hb_002609_110 Hb_002609_110 Hb_003097_150--Hb_002609_110 Hb_002149_020 Hb_002149_020 Hb_003097_150--Hb_002149_020 Hb_001571_040 Hb_001571_040 Hb_003097_150--Hb_001571_040 Hb_000152_820 Hb_000152_820 Hb_000317_020--Hb_000152_820 Hb_000317_020--Hb_001736_040 Hb_001975_160 Hb_001975_160 Hb_000317_020--Hb_001975_160 Hb_000661_050 Hb_000661_050 Hb_000317_020--Hb_000661_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.62621 5.18464 2.35739 3.18616 13.5178 12.6278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.57207 11.7644 10.9677 5.71529 5.05035

CAGE analysis