Hb_005237_010

Information

Type -
Description -
Location Contig5237: 15399-18035
Sequence    

Annotation

kegg
ID rcu:RCOM_1589530
description hypothetical protein
nr
ID XP_012068303.1
description PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16104 PE=4 SV=1
Gene Ontology
ID GO:0006457
description PREDICTED: uncharacterized protein LOC105630921

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46908: 15554-18024 , PASA_asmbl_46909: 15880-16158 , PASA_asmbl_46910: 16666-16774
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005237_010 0.0 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
2 Hb_003097_150 0.0750562133 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
3 Hb_004600_040 0.0775622035 - - -
4 Hb_005928_060 0.0783977692 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
5 Hb_012654_010 0.0830255478 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
6 Hb_000815_210 0.0831248513 - - uncoupling protein 3, partial [Manihot esculenta]
7 Hb_002007_250 0.0846045764 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001057_010 0.0853661172 - - cation-transporting atpase plant, putative [Ricinus communis]
9 Hb_001214_130 0.0871573238 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
10 Hb_007364_010 0.0886022958 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
11 Hb_003777_330 0.0894030254 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
12 Hb_000107_100 0.0894241598 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
13 Hb_000421_260 0.0912707485 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
14 Hb_000340_510 0.0913917534 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
15 Hb_000538_200 0.0916179858 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
16 Hb_001040_170 0.0917181884 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001720_050 0.0940078439 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
18 Hb_007547_010 0.0941698064 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
19 Hb_005527_050 0.0954174036 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
20 Hb_010710_110 0.0959019041 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_005237_010 Hb_005237_010 Hb_003097_150 Hb_003097_150 Hb_005237_010--Hb_003097_150 Hb_004600_040 Hb_004600_040 Hb_005237_010--Hb_004600_040 Hb_005928_060 Hb_005928_060 Hb_005237_010--Hb_005928_060 Hb_012654_010 Hb_012654_010 Hb_005237_010--Hb_012654_010 Hb_000815_210 Hb_000815_210 Hb_005237_010--Hb_000815_210 Hb_002007_250 Hb_002007_250 Hb_005237_010--Hb_002007_250 Hb_000300_060 Hb_000300_060 Hb_003097_150--Hb_000300_060 Hb_003097_150--Hb_004600_040 Hb_002609_110 Hb_002609_110 Hb_003097_150--Hb_002609_110 Hb_002149_020 Hb_002149_020 Hb_003097_150--Hb_002149_020 Hb_001571_040 Hb_001571_040 Hb_003097_150--Hb_001571_040 Hb_002876_110 Hb_002876_110 Hb_004600_040--Hb_002876_110 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_000421_260 Hb_000421_260 Hb_004600_040--Hb_000421_260 Hb_000317_020 Hb_000317_020 Hb_004600_040--Hb_000317_020 Hb_000905_190 Hb_000905_190 Hb_005928_060--Hb_000905_190 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_001214_130 Hb_001214_130 Hb_005928_060--Hb_001214_130 Hb_000019_230 Hb_000019_230 Hb_005928_060--Hb_000019_230 Hb_000997_020 Hb_000997_020 Hb_005928_060--Hb_000997_020 Hb_001504_160 Hb_001504_160 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_000051_070 Hb_000051_070 Hb_000815_210--Hb_000051_070 Hb_000815_210--Hb_000538_200 Hb_003406_010 Hb_003406_010 Hb_000815_210--Hb_003406_010 Hb_000815_210--Hb_004600_040 Hb_011673_030 Hb_011673_030 Hb_000815_210--Hb_011673_030 Hb_000608_030 Hb_000608_030 Hb_000815_210--Hb_000608_030 Hb_002007_250--Hb_012654_010 Hb_002007_250--Hb_001504_160 Hb_000076_080 Hb_000076_080 Hb_002007_250--Hb_000076_080 Hb_004044_020 Hb_004044_020 Hb_002007_250--Hb_004044_020 Hb_002007_250--Hb_000107_100 Hb_004724_360 Hb_004724_360 Hb_002007_250--Hb_004724_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.9467 21.8343 8.1123 7.99941 68.3108 50.0752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.0492 40.9868 36.0965 16.2804 14.461

CAGE analysis