Hb_000421_260

Information

Type -
Description -
Location Contig421: 180338-187159
Sequence    

Annotation

kegg
ID rcu:RCOM_1398950
description ATP binding protein, putative (EC:6.3.4.16)
nr
ID XP_012064882.1
description PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
swissprot
ID Q42601
description Carbamoyl-phosphate synthase large chain, chloroplastic OS=Arabidopsis thaliana GN=CARB PE=1 SV=1
trembl
ID B9SK20
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1398950 PE=3 SV=1
Gene Ontology
ID GO:0003824
description carbamoyl-phosphate synthase large chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41623: 180384-180743 , PASA_asmbl_41626: 186378-186856
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_260 0.0 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
2 Hb_002890_340 0.0474607136 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
3 Hb_001720_050 0.0563131023 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
4 Hb_007951_050 0.0602873056 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_005062_070 0.0665772077 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
6 Hb_004600_040 0.0667330862 - - -
7 Hb_009111_050 0.0676374689 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
8 Hb_015306_020 0.0686246389 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
9 Hb_000030_010 0.071579744 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
10 Hb_000152_820 0.0743483474 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
11 Hb_003642_060 0.0749513862 - - hypothetical protein RCOM_1189860 [Ricinus communis]
12 Hb_001030_120 0.0766978143 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
13 Hb_001454_210 0.0778499418 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
14 Hb_000538_200 0.0780680121 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
15 Hb_003777_330 0.0780695981 - - ribonucleoside-diphosphate reductase large chain, putative [Ricinus communis]
16 Hb_004195_160 0.0788158821 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
17 Hb_033642_010 0.0794377169 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
18 Hb_000803_150 0.0795746415 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
19 Hb_004046_010 0.0796148854 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
20 Hb_000317_020 0.0810532882 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]

Gene co-expression network

sample Hb_000421_260 Hb_000421_260 Hb_002890_340 Hb_002890_340 Hb_000421_260--Hb_002890_340 Hb_001720_050 Hb_001720_050 Hb_000421_260--Hb_001720_050 Hb_007951_050 Hb_007951_050 Hb_000421_260--Hb_007951_050 Hb_005062_070 Hb_005062_070 Hb_000421_260--Hb_005062_070 Hb_004600_040 Hb_004600_040 Hb_000421_260--Hb_004600_040 Hb_009111_050 Hb_009111_050 Hb_000421_260--Hb_009111_050 Hb_015306_020 Hb_015306_020 Hb_002890_340--Hb_015306_020 Hb_002039_010 Hb_002039_010 Hb_002890_340--Hb_002039_010 Hb_004046_010 Hb_004046_010 Hb_002890_340--Hb_004046_010 Hb_002890_340--Hb_001720_050 Hb_002890_340--Hb_009111_050 Hb_003777_330 Hb_003777_330 Hb_001720_050--Hb_003777_330 Hb_000418_100 Hb_000418_100 Hb_001720_050--Hb_000418_100 Hb_033642_010 Hb_033642_010 Hb_001720_050--Hb_033642_010 Hb_000152_820 Hb_000152_820 Hb_001720_050--Hb_000152_820 Hb_000754_060 Hb_000754_060 Hb_007951_050--Hb_000754_060 Hb_002496_030 Hb_002496_030 Hb_007951_050--Hb_002496_030 Hb_001159_100 Hb_001159_100 Hb_007951_050--Hb_001159_100 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_005062_070--Hb_001454_210 Hb_001030_120 Hb_001030_120 Hb_005062_070--Hb_001030_120 Hb_005062_070--Hb_004046_010 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_005062_070--Hb_009111_050 Hb_002876_110 Hb_002876_110 Hb_004600_040--Hb_002876_110 Hb_000538_200 Hb_000538_200 Hb_004600_040--Hb_000538_200 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_003097_150 Hb_003097_150 Hb_004600_040--Hb_003097_150 Hb_000317_020 Hb_000317_020 Hb_004600_040--Hb_000317_020 Hb_009111_050--Hb_028872_140 Hb_009111_050--Hb_033642_010 Hb_009111_050--Hb_001030_120 Hb_009111_050--Hb_001454_210 Hb_009111_050--Hb_000190_140 Hb_009111_050--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.09904 1.7706 0.930512 0.772564 4.33909 5.33667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08405 3.74973 4.70843 1.79901 1.40051

CAGE analysis