Hb_000107_100

Information

Type -
Description -
Location Contig107: 80734-82383
Sequence    

Annotation

kegg
ID rcu:RCOM_0341910
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP30643.1
description hypothetical protein JCGZ_16208 [Jatropha curcas]
swissprot
ID Q9FMA1
description Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
trembl
ID A0A067K6I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16208 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at5g56310

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02138: 82099-82321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_100 0.0 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
2 Hb_001504_160 0.0595839709 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
3 Hb_012654_010 0.0600034416 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
4 Hb_017168_010 0.0666412261 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000340_510 0.0708092586 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
6 Hb_001040_170 0.0768712757 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_001366_040 0.0799803288 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
8 Hb_000139_250 0.0806917409 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
9 Hb_002007_250 0.0825815066 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003384_030 0.0832012282 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
11 Hb_005730_030 0.0852389364 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
12 Hb_000001_180 0.0861395836 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
13 Hb_002818_040 0.0864646616 - - tRNA synthetase-related family protein [Populus trichocarpa]
14 Hb_005237_010 0.0894241598 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
15 Hb_000977_180 0.0894491636 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
16 Hb_006091_030 0.0897952629 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]
17 Hb_000076_080 0.0898922216 - - PREDICTED: protein MOS2 [Jatropha curcas]
18 Hb_007447_010 0.0905515893 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
19 Hb_000803_300 0.0916650502 - - nuclear movement protein nudc, putative [Ricinus communis]
20 Hb_003581_140 0.0917677511 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_000107_100 Hb_000107_100 Hb_001504_160 Hb_001504_160 Hb_000107_100--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_000107_100--Hb_012654_010 Hb_017168_010 Hb_017168_010 Hb_000107_100--Hb_017168_010 Hb_000340_510 Hb_000340_510 Hb_000107_100--Hb_000340_510 Hb_001040_170 Hb_001040_170 Hb_000107_100--Hb_001040_170 Hb_001366_040 Hb_001366_040 Hb_000107_100--Hb_001366_040 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_001504_160--Hb_012654_010 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080 Hb_010222_080 Hb_010222_080 Hb_017168_010--Hb_010222_080 Hb_017168_010--Hb_000340_510 Hb_002026_110 Hb_002026_110 Hb_017168_010--Hb_002026_110 Hb_002942_220 Hb_002942_220 Hb_017168_010--Hb_002942_220 Hb_012132_030 Hb_012132_030 Hb_017168_010--Hb_012132_030 Hb_002818_040 Hb_002818_040 Hb_000340_510--Hb_002818_040 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000001_180 Hb_000001_180 Hb_000340_510--Hb_000001_180 Hb_000340_510--Hb_002026_110 Hb_006091_030 Hb_006091_030 Hb_001040_170--Hb_006091_030 Hb_001040_170--Hb_017168_010 Hb_000327_240 Hb_000327_240 Hb_001040_170--Hb_000327_240 Hb_005237_010 Hb_005237_010 Hb_001040_170--Hb_005237_010 Hb_001040_170--Hb_000340_510 Hb_004055_040 Hb_004055_040 Hb_001366_040--Hb_004055_040 Hb_002798_040 Hb_002798_040 Hb_001366_040--Hb_002798_040 Hb_004452_100 Hb_004452_100 Hb_001366_040--Hb_004452_100 Hb_031754_010 Hb_031754_010 Hb_001366_040--Hb_031754_010 Hb_001366_040--Hb_001504_160 Hb_000327_310 Hb_000327_310 Hb_001366_040--Hb_000327_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.13981 1.79442 1.0163 0.596557 6.22856 4.94436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.68847 2.09316 3.36466 1.88856 1.01791

CAGE analysis