Hb_004724_080

Information

Type -
Description -
Location Contig4724: 73049-74308
Sequence    

Annotation

kegg
ID rcu:RCOM_1280910
description hypothetical protein
nr
ID XP_002523797.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZW88
description F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana GN=At1g67190 PE=2 SV=1
trembl
ID B9SCS8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1280910 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box lrr-repeat protein at1g67190-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000928_210 0.0652655477 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
3 Hb_002739_100 0.0679392118 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
4 Hb_017358_030 0.0679467338 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
5 Hb_000876_070 0.069601987 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
6 Hb_002105_040 0.069889814 - - -
7 Hb_000003_250 0.0719424138 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
8 Hb_002046_180 0.0732510527 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
9 Hb_007317_200 0.0750681649 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000836_040 0.0762804733 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_075449_010 0.0767113729 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
12 Hb_000777_040 0.0774955207 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
13 Hb_009767_110 0.0776586725 - - -
14 Hb_005463_100 0.0786125151 - - hypothetical protein POPTR_0001s08400g [Populus trichocarpa]
15 Hb_000173_290 0.0798606579 - - guanylate kinase, putative [Ricinus communis]
16 Hb_000749_220 0.0809949896 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
17 Hb_000258_270 0.081118239 - - PREDICTED: cullin-3A [Jatropha curcas]
18 Hb_012019_010 0.0814431406 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
19 Hb_000703_350 0.0814852529 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
20 Hb_002863_050 0.0821844796 - - aldose 1-epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004724_080 Hb_004724_080 Hb_000928_210 Hb_000928_210 Hb_004724_080--Hb_000928_210 Hb_002739_100 Hb_002739_100 Hb_004724_080--Hb_002739_100 Hb_017358_030 Hb_017358_030 Hb_004724_080--Hb_017358_030 Hb_000876_070 Hb_000876_070 Hb_004724_080--Hb_000876_070 Hb_002105_040 Hb_002105_040 Hb_004724_080--Hb_002105_040 Hb_000003_250 Hb_000003_250 Hb_004724_080--Hb_000003_250 Hb_000928_210--Hb_000876_070 Hb_004254_120 Hb_004254_120 Hb_000928_210--Hb_004254_120 Hb_000928_210--Hb_002739_100 Hb_000206_210 Hb_000206_210 Hb_000928_210--Hb_000206_210 Hb_002046_180 Hb_002046_180 Hb_000928_210--Hb_002046_180 Hb_002739_100--Hb_000876_070 Hb_005779_060 Hb_005779_060 Hb_002739_100--Hb_005779_060 Hb_007691_030 Hb_007691_030 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_000165_250 Hb_000165_250 Hb_017358_030--Hb_000165_250 Hb_000866_260 Hb_000866_260 Hb_017358_030--Hb_000866_260 Hb_007389_010 Hb_007389_010 Hb_017358_030--Hb_007389_010 Hb_017358_030--Hb_002739_100 Hb_000029_050 Hb_000029_050 Hb_017358_030--Hb_000029_050 Hb_000917_060 Hb_000917_060 Hb_017358_030--Hb_000917_060 Hb_000876_070--Hb_005779_060 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_000175_460 Hb_000175_460 Hb_002105_040--Hb_000175_460 Hb_005348_140 Hb_005348_140 Hb_002105_040--Hb_005348_140 Hb_000510_320 Hb_000510_320 Hb_002105_040--Hb_000510_320 Hb_005663_060 Hb_005663_060 Hb_002105_040--Hb_005663_060 Hb_002105_040--Hb_000876_070 Hb_001014_030 Hb_001014_030 Hb_000003_250--Hb_001014_030 Hb_005463_100 Hb_005463_100 Hb_000003_250--Hb_005463_100 Hb_000003_250--Hb_002046_180 Hb_010128_080 Hb_010128_080 Hb_000003_250--Hb_010128_080 Hb_000003_250--Hb_000876_070 Hb_001799_210 Hb_001799_210 Hb_000003_250--Hb_001799_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.20651 5.00636 4.38173 6.84777 7.23567 8.00123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.04358 11.1117 12.6908 4.48347 7.18578

CAGE analysis