Hb_001143_080

Information

Type -
Description -
Location Contig1143: 71857-76680
Sequence    

Annotation

kegg
ID rcu:RCOM_1030590
description protein with unknown function
nr
ID XP_012078257.1
description PREDICTED: F-box protein 7 [Jatropha curcas]
swissprot
ID Q9XI00
description F-box protein 7 OS=Arabidopsis thaliana GN=SKIP32 PE=1 SV=1
trembl
ID A0A067K9B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12103 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04322: 71888-76471 , PASA_asmbl_04323: 72471-76057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001143_080 0.0 - - PREDICTED: F-box protein 7 [Jatropha curcas]
2 Hb_001638_020 0.065515018 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001141_030 0.0708504881 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
4 Hb_001998_050 0.0728062431 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
5 Hb_001269_170 0.0766194036 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
6 Hb_000227_230 0.0767440889 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
7 Hb_000072_080 0.0816310994 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
8 Hb_001109_020 0.081937822 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012753_160 0.0852495852 - - ara4-interacting protein, putative [Ricinus communis]
10 Hb_003398_120 0.0859013102 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
11 Hb_005883_100 0.0867500641 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
12 Hb_015175_030 0.0877692904 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
13 Hb_002925_030 0.0906616415 - - 40S ribosomal protein S16B [Hevea brasiliensis]
14 Hb_003994_040 0.0936041949 - - -
15 Hb_000979_230 0.095084252 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
16 Hb_000264_090 0.0960004144 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_000363_480 0.096697834 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
18 Hb_001242_110 0.0967724726 - - 40S ribosomal protein S18, putative [Ricinus communis]
19 Hb_089839_020 0.0987247448 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
20 Hb_000239_010 0.0989729933 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001143_080 Hb_001143_080 Hb_001638_020 Hb_001638_020 Hb_001143_080--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_001143_080--Hb_001141_030 Hb_001998_050 Hb_001998_050 Hb_001143_080--Hb_001998_050 Hb_001269_170 Hb_001269_170 Hb_001143_080--Hb_001269_170 Hb_000227_230 Hb_000227_230 Hb_001143_080--Hb_000227_230 Hb_000072_080 Hb_000072_080 Hb_001143_080--Hb_000072_080 Hb_003398_120 Hb_003398_120 Hb_001638_020--Hb_003398_120 Hb_001638_020--Hb_001998_050 Hb_005841_050 Hb_005841_050 Hb_001638_020--Hb_005841_050 Hb_001248_080 Hb_001248_080 Hb_001638_020--Hb_001248_080 Hb_001638_020--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_012753_160 Hb_012753_160 Hb_001141_030--Hb_012753_160 Hb_003994_040 Hb_003994_040 Hb_001141_030--Hb_003994_040 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_002925_030 Hb_002925_030 Hb_001998_050--Hb_002925_030 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_004375_100 Hb_004375_100 Hb_001269_170--Hb_004375_100 Hb_001269_170--Hb_012753_160 Hb_000136_170 Hb_000136_170 Hb_001269_170--Hb_000136_170 Hb_005463_040 Hb_005463_040 Hb_001269_170--Hb_005463_040 Hb_007044_060 Hb_007044_060 Hb_001269_170--Hb_007044_060 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_000072_080--Hb_012753_160 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_138585_060 Hb_138585_060 Hb_000072_080--Hb_138585_060 Hb_021409_030 Hb_021409_030 Hb_000072_080--Hb_021409_030 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.8233 19.134 9.67735 25.2315 29.6603 50.0932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.7132 126.725 82.0082 36.4446 16.2215

CAGE analysis