Hb_001638_020

Information

Type -
Description -
Location Contig1638: 54027-56688
Sequence    

Annotation

kegg
ID rcu:RCOM_1591960
description hypothetical protein
nr
ID XP_012071713.1
description PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q9SX99
description Protein OSB1, mitochondrial OS=Arabidopsis thaliana GN=OSB1 PE=1 SV=1
trembl
ID A0A067KQI8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04327 PE=4 SV=1
Gene Ontology
ID GO:0003697
description protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14976: 52666-53057 , PASA_asmbl_14977: 54185-56618
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_020 0.0 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_001143_080 0.065515018 - - PREDICTED: F-box protein 7 [Jatropha curcas]
3 Hb_003398_120 0.0810728101 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_001998_050 0.0829241961 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
5 Hb_005841_050 0.0844348237 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
6 Hb_001248_080 0.0844936208 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
7 Hb_001141_030 0.0863133963 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
8 Hb_001109_020 0.0880507345 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000349_290 0.0882916946 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
10 Hb_002217_450 0.0900050415 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
11 Hb_000363_480 0.0919822669 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
12 Hb_007382_150 0.0962288276 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
13 Hb_000264_090 0.0963329282 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
14 Hb_015175_030 0.0980023177 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
15 Hb_000099_060 0.0984296043 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
16 Hb_007943_090 0.0990112834 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
17 Hb_002609_280 0.0998105061 - - villin 1-4, putative [Ricinus communis]
18 Hb_002097_060 0.1000566223 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_005731_170 0.1006468478 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
20 Hb_005883_100 0.1019526483 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001638_020 Hb_001638_020 Hb_001143_080 Hb_001143_080 Hb_001638_020--Hb_001143_080 Hb_003398_120 Hb_003398_120 Hb_001638_020--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_001638_020--Hb_001998_050 Hb_005841_050 Hb_005841_050 Hb_001638_020--Hb_005841_050 Hb_001248_080 Hb_001248_080 Hb_001638_020--Hb_001248_080 Hb_001141_030 Hb_001141_030 Hb_001638_020--Hb_001141_030 Hb_001143_080--Hb_001141_030 Hb_001143_080--Hb_001998_050 Hb_001269_170 Hb_001269_170 Hb_001143_080--Hb_001269_170 Hb_000227_230 Hb_000227_230 Hb_001143_080--Hb_000227_230 Hb_000072_080 Hb_000072_080 Hb_001143_080--Hb_000072_080 Hb_002925_030 Hb_002925_030 Hb_003398_120--Hb_002925_030 Hb_003398_120--Hb_001248_080 Hb_003398_120--Hb_000227_230 Hb_003398_120--Hb_001998_050 Hb_148930_010 Hb_148930_010 Hb_003398_120--Hb_148930_010 Hb_011311_010 Hb_011311_010 Hb_003398_120--Hb_011311_010 Hb_001998_050--Hb_000227_230 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_001998_050--Hb_002925_030 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_002217_450 Hb_002217_450 Hb_005841_050--Hb_002217_450 Hb_146225_010 Hb_146225_010 Hb_005841_050--Hb_146225_010 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_021409_090 Hb_021409_090 Hb_005841_050--Hb_021409_090 Hb_155764_020 Hb_155764_020 Hb_001248_080--Hb_155764_020 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240 Hb_003203_040 Hb_003203_040 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_001141_030--Hb_012753_160 Hb_003994_040 Hb_003994_040 Hb_001141_030--Hb_003994_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0844 7.88151 3.01399 10.0929 9.92337 16.8418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6503 49.7535 34.4402 11.1624 3.61375

CAGE analysis