Hb_002217_450

Information

Type -
Description -
Location Contig2217: 388154-392431
Sequence    

Annotation

kegg
ID rcu:RCOM_1000880
description prefoldin subunit, putative
nr
ID XP_012084105.1
description PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
swissprot
ID P57741
description Probable prefoldin subunit 3 OS=Arabidopsis thaliana GN=At5g49510 PE=1 SV=1
trembl
ID A0A067JVD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19021 PE=4 SV=1
Gene Ontology
ID GO:0016272
description probable prefoldin subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22953: 390384-391954 , PASA_asmbl_22954: 388379-392343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_450 0.0 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
2 Hb_001141_030 0.076980722 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
3 Hb_003203_040 0.0812945814 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
4 Hb_003398_120 0.0817229619 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
5 Hb_021409_090 0.0828600224 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
6 Hb_005841_050 0.0835120433 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
7 Hb_001863_400 0.0878072106 - - hypothetical protein EUGRSUZ_F03302 [Eucalyptus grandis]
8 Hb_001638_020 0.0900050415 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_011628_040 0.0951668044 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
10 Hb_003893_050 0.0972518078 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
11 Hb_000239_030 0.0976973913 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
12 Hb_011311_010 0.0986842468 - - 60S ribosomal protein L27C [Hevea brasiliensis]
13 Hb_001248_080 0.0987293204 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
14 Hb_000163_130 0.10300907 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
15 Hb_001143_080 0.1031291027 - - PREDICTED: F-box protein 7 [Jatropha curcas]
16 Hb_000441_190 0.1033387814 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
17 Hb_007100_030 0.1045285412 - - 40S ribosomal protein S17B [Hevea brasiliensis]
18 Hb_002925_030 0.10657944 - - 40S ribosomal protein S16B [Hevea brasiliensis]
19 Hb_001998_050 0.1065958804 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
20 Hb_003994_040 0.1067633575 - - -

Gene co-expression network

sample Hb_002217_450 Hb_002217_450 Hb_001141_030 Hb_001141_030 Hb_002217_450--Hb_001141_030 Hb_003203_040 Hb_003203_040 Hb_002217_450--Hb_003203_040 Hb_003398_120 Hb_003398_120 Hb_002217_450--Hb_003398_120 Hb_021409_090 Hb_021409_090 Hb_002217_450--Hb_021409_090 Hb_005841_050 Hb_005841_050 Hb_002217_450--Hb_005841_050 Hb_001863_400 Hb_001863_400 Hb_002217_450--Hb_001863_400 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001143_080 Hb_001143_080 Hb_001141_030--Hb_001143_080 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_012753_160 Hb_012753_160 Hb_001141_030--Hb_012753_160 Hb_003994_040 Hb_003994_040 Hb_001141_030--Hb_003994_040 Hb_011628_040 Hb_011628_040 Hb_003203_040--Hb_011628_040 Hb_003893_050 Hb_003893_050 Hb_003203_040--Hb_003893_050 Hb_010672_070 Hb_010672_070 Hb_003203_040--Hb_010672_070 Hb_005511_160 Hb_005511_160 Hb_003203_040--Hb_005511_160 Hb_005063_050 Hb_005063_050 Hb_003203_040--Hb_005063_050 Hb_002925_030 Hb_002925_030 Hb_003398_120--Hb_002925_030 Hb_001248_080 Hb_001248_080 Hb_003398_120--Hb_001248_080 Hb_000227_230 Hb_000227_230 Hb_003398_120--Hb_000227_230 Hb_001998_050 Hb_001998_050 Hb_003398_120--Hb_001998_050 Hb_148930_010 Hb_148930_010 Hb_003398_120--Hb_148930_010 Hb_011311_010 Hb_011311_010 Hb_003398_120--Hb_011311_010 Hb_187083_010 Hb_187083_010 Hb_021409_090--Hb_187083_010 Hb_000199_070 Hb_000199_070 Hb_021409_090--Hb_000199_070 Hb_000236_460 Hb_000236_460 Hb_021409_090--Hb_000236_460 Hb_011161_050 Hb_011161_050 Hb_021409_090--Hb_011161_050 Hb_003561_030 Hb_003561_030 Hb_021409_090--Hb_003561_030 Hb_146225_010 Hb_146225_010 Hb_005841_050--Hb_146225_010 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_005841_050--Hb_021409_090 Hb_001863_400--Hb_003994_040 Hb_001863_400--Hb_001248_080 Hb_001863_400--Hb_001141_030 Hb_001863_400--Hb_003203_040 Hb_001863_400--Hb_003455_040 Hb_076626_010 Hb_076626_010 Hb_001863_400--Hb_076626_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1723 11.1508 13.2495 29.7369 29.0305 44.4257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.6099 153.573 77.5439 25.6179 9.67157

CAGE analysis